Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0272
         (594 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          24   1.3  
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          23   1.7  
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          23   2.3  
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          23   2.3  
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          23   2.3  
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    23   2.3  
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          22   5.2  
AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    21   6.9  

>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 15/49 (30%), Positives = 20/49 (40%)
 Frame = +1

Query: 394 G*RQNLFPRGSQFHGAYENEGNCRSLSWQNCGRMQLSRFPRTSMTLKDK 540
           G R   F R S  H  YE+  +    S++N G    SR        KD+
Sbjct: 218 GSRSRSFQRTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRSREYKKKDR 266


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 14/47 (29%), Positives = 19/47 (40%)
 Frame = +1

Query: 400 RQNLFPRGSQFHGAYENEGNCRSLSWQNCGRMQLSRFPRTSMTLKDK 540
           R   F R S  H  YE+  +    S++N G    SR        KD+
Sbjct: 220 RSRSFQRTSSCHSRYEDSRHEDGNSYRNDGERSCSRDRSREYKKKDR 266


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 14/47 (29%), Positives = 19/47 (40%)
 Frame = +1

Query: 400 RQNLFPRGSQFHGAYENEGNCRSLSWQNCGRMQLSRFPRTSMTLKDK 540
           R   F R S  H  YE+  +    S++N G    SR        KD+
Sbjct: 220 RSRSFQRTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRSREYKKKDR 266


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 14/47 (29%), Positives = 19/47 (40%)
 Frame = +1

Query: 400 RQNLFPRGSQFHGAYENEGNCRSLSWQNCGRMQLSRFPRTSMTLKDK 540
           R   F R S  H  YE+  +    S++N G    SR        KD+
Sbjct: 220 RSRSFQRTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRSREYKKKDR 266


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 14/47 (29%), Positives = 19/47 (40%)
 Frame = +1

Query: 400 RQNLFPRGSQFHGAYENEGNCRSLSWQNCGRMQLSRFPRTSMTLKDK 540
           R   F R S  H  YE+  +    S++N G    SR        KD+
Sbjct: 220 RSRSFQRTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRSREYKKKDR 266


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 14/47 (29%), Positives = 19/47 (40%)
 Frame = +1

Query: 400 RQNLFPRGSQFHGAYENEGNCRSLSWQNCGRMQLSRFPRTSMTLKDK 540
           R   F R S  H  YE+  +    S++N G    SR        KD+
Sbjct: 220 RSRSFQRTSSCHSRYEDSRHEDRNSYRNDGERSCSRDRSREYKKKDR 266


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 14/47 (29%), Positives = 19/47 (40%)
 Frame = +1

Query: 400 RQNLFPRGSQFHGAYENEGNCRSLSWQNCGRMQLSRFPRTSMTLKDK 540
           R   F R S  H  YE+  +    S++N G    SR        KD+
Sbjct: 220 RSRSFQRTSSCHSRYEDLRHEDRNSYRNDGERSCSRDRSREYKKKDR 266


>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
          finger domain-Z3 isoform protein.
          Length = 92

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 73 PFCIFNQSCYLFLKQ 29
          P+C  N SCY  LK+
Sbjct: 9  PYCRRNFSCYYSLKR 23


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 172,297
Number of Sequences: 438
Number of extensions: 3952
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17359926
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)