Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0271
         (621 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    26   3.8  
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa...    26   5.1  
SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces pomb...    26   5.1  
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc...    25   6.7  
SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|c...    25   6.7  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    25   8.8  

>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 438 NENERKNQNTVLRRHIYSEEDSLVSLNK 521
           N  E KNQN  L   I + E+ +V LNK
Sbjct: 458 NLEELKNQNDYLTSQITNLEEGMVMLNK 485


>SPAC1B9.02c |sck1||serine/threonine protein kinase
           Sck1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 696

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 19/71 (26%), Positives = 30/71 (42%)
 Frame = +3

Query: 300 VGNGGIASDIVHATSGIEKVWVIRDDYISATFIDPGAAEFFQETFKNENERKNQNTVLRR 479
           V N  I S++  A +       I+D +   TF++    E FQ     ENE  +     R 
Sbjct: 602 VKNINIVSNVDPANASTPLSNTIQDRFRGFTFVNKSIDEQFQNLGLQENEETDNLHACRT 661

Query: 480 HIYSEEDSLVS 512
             +S  +S+ S
Sbjct: 662 TTHSSVNSINS 672


>SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 386

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 15/36 (41%), Positives = 21/36 (58%)
 Frame = -1

Query: 132 SKLSAFQYQDVLVNHI*FLNSDGSFAKEVASVSFTS 25
           S+LSA   +D  +NH+    SDG  + + AS SF S
Sbjct: 38  SELSAMMSKDNTLNHVKQEPSDGFSSVKWASTSFDS 73


>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
           L2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 318

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 12/36 (33%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
 Frame = +3

Query: 186 IPRLISDSKNSKRVL---GIRDTESVKDFQQKLKTG 284
           + +L S++ N   +L   G+R+ ++V+ F+  LKTG
Sbjct: 101 VEKLNSETANKSYILACDGLREGDTVESFRSLLKTG 136


>SPCC622.19 |jmj4|mug149|Jmj4 protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 473

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 237 RDTESVKDFQQKLKTGRRMVI 299
           R+  S+K+F QKLK G R+ +
Sbjct: 92  RNEMSIKEFFQKLKNGERLYL 112


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
 Frame = +3

Query: 153 QYDVICICTGGIPRLISDSKNSKRVLGIRDTESVK-DFQQKL--KTGRRMVIVGNGGI 317
           Q DV+    G IP   S  +N      +   ES+  DF+ ++   +G R+V+ GNGG+
Sbjct: 428 QLDVVL--KGSIPDTSSVRRNPPCF--VNGVESINVDFEARIFDVSGDRLVLAGNGGL 481


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,649,832
Number of Sequences: 5004
Number of extensions: 56855
Number of successful extensions: 165
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)