Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0271
(621 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0332 + 2971361-2971439,2971596-2971783,2971985-2972062,297... 39 0.003
04_03_0589 - 17604361-17604800,17604887-17604949,17605025-176052... 30 1.3
04_03_0459 + 16159015-16159771,16160251-16160365,16160478-161608... 30 1.3
11_06_0437 - 23533218-23536382 30 1.7
05_07_0267 + 28818396-28818513,28819292-28819697,28819796-288199... 30 1.7
01_06_0920 - 33009183-33009335,33009421-33009741,33010221-330103... 29 3.0
10_06_0105 - 10790092-10790323,10791092-10791234,10791322-107914... 29 3.9
05_04_0322 + 20239793-20240127,20240176-20240728,20241317-202414... 29 3.9
01_06_1149 - 34901338-34901466,34901707-34901838,34901940-349022... 28 5.2
>08_01_0332 +
2971361-2971439,2971596-2971783,2971985-2972062,
2972354-2972425,2972513-2972631,2972858-2972942,
2973096-2973185,2973268-2973369,2973448-2973624,
2973874-2973954,2974511-2974582,2974662-2974756,
2974831-2974919,2975016-2975078,2975161-2975204,
2975554-2975685
Length = 521
Score = 39.1 bits (87), Expect = 0.003
Identities = 31/133 (23%), Positives = 58/133 (43%), Gaps = 5/133 (3%)
Frame = +3
Query: 54 WQKIHPNLEIIY-DSLKHLDTEKQKALTDKGVHIQYDVICICTG-GIPRLISD-SKNSKR 224
W K + +E++Y D + D + T G ++Y + I TG RL + N
Sbjct: 132 WYKEN-GIEVLYEDPVVAFDGKTHTLKTSSGKILKYGSLIISTGCEASRLPAKIGGNLPG 190
Query: 225 VLGIRDTESVKDFQQKLKTGRRMVIVGNGGIASDIVHATSG--IEKVWVIRDDYISATFI 398
V IRD L +++V++G G I ++ A G ++ + +D+I
Sbjct: 191 VHYIRDVADADSLVSSLGKAKKIVVIGGGYIGMEVAAAACGWNLDTTIIFPEDHIMPRLF 250
Query: 399 DPGAAEFFQETFK 437
P A+ ++E ++
Sbjct: 251 TPSLAKKYEELYQ 263
>04_03_0589 -
17604361-17604800,17604887-17604949,17605025-17605280,
17605373-17605634,17605739-17605885,17606118-17606236,
17606373-17606531,17606911-17606947,17607023-17607174
Length = 544
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = -3
Query: 139 LSVKAFCFSVSRCFSESYIISKFGWI-FCQGGG 44
L +A +S SRC E+Y++ FGW+ FC G G
Sbjct: 67 LQAEADEYSYSRCL-EAYLLWLFGWVMFCGGHG 98
>04_03_0459 +
16159015-16159771,16160251-16160365,16160478-16160844,
16160930-16161244,16161324-16161644,16161730-16161882
Length = 675
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = -3
Query: 139 LSVKAFCFSVSRCFSESYIISKFGWI-FCQGGG 44
L +A +S SRC E+Y++ FGW+ FC G G
Sbjct: 417 LQAEADEYSYSRCL-EAYLLWLFGWVMFCGGHG 448
>11_06_0437 - 23533218-23536382
Length = 1054
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/53 (32%), Positives = 26/53 (49%)
Frame = +3
Query: 159 DVICICTGGIPRLISDSKNSKRVLGIRDTESVKDFQQKLKTGRRMVIVGNGGI 317
DV+ C + +I KN ++ I + E D + K K ++ IVG GGI
Sbjct: 176 DVVHACRKLVDLVI---KNKEKTADIENKEKKADIEHKKKEPYKLAIVGTGGI 225
>05_07_0267 +
28818396-28818513,28819292-28819697,28819796-28819973,
28820414-28820553,28820629-28821874,28821952-28822052,
28822170-28822314,28822755-28822823,28822910-28822955,
28823049-28823422,28823622-28823701,28823813-28823948,
28824199-28824358,28824582-28824664,28825417-28825545
Length = 1136
Score = 29.9 bits (64), Expect = 1.7
Identities = 31/118 (26%), Positives = 51/118 (43%), Gaps = 7/118 (5%)
Frame = +3
Query: 39 QRPPPWQKIHPNLEIIYDSLKHLDTEKQKALTDKGVHIQYDVICIC---TGGIPRLIS-D 206
Q+PP WQ++ + ++ D L L+T + TD G++ +V + +G +S
Sbjct: 612 QKPPVWQEVERSSLLVGDDLNILNTSADDSRTD-GLYDDTEVESMSRMFSGANASSLSLA 670
Query: 207 SKNSKRVLGIRDTESVKDFQQKLK---TGRRMVIVGNGGIASDIVHATSGIEKVWVIR 371
S +S T ++D KLK G +V G+G A V T W I+
Sbjct: 671 STDSSYSSNYSTTNVLEDSYLKLKCEVVGASIVKSGSGMFAVYSVSVTDANGNSWSIK 728
>01_06_0920 -
33009183-33009335,33009421-33009741,33010221-33010343,
33010476-33010634,33010720-33011086,33011162-33011315,
33011782-33012874
Length = 789
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = -3
Query: 139 LSVKAFCFSVSRCFSESYIISKFGWIFCQGG 47
L +A +S SRC E+Y++ FGW+ GG
Sbjct: 542 LQAEADEYSYSRCL-EAYLLWLFGWVMFYGG 571
>10_06_0105 - 10790092-10790323,10791092-10791234,10791322-10791429,
10791796-10791903,10793133-10797686,10798347-10798461,
10799597-10799724,10799843-10800043,10800158-10800227,
10801233-10801314,10801433-10801556,10801761-10801778
Length = 1960
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/96 (18%), Positives = 41/96 (42%)
Frame = +3
Query: 237 RDTESVKDFQQKLKTGRRMVIVGNGGIASDIVHATSGIEKVWVIRDDYISATFIDPGAAE 416
R E ++ ++ +K+ + + DIV + E+V +DD + + E
Sbjct: 1383 RVNEEKEELEELIKSNEEQFVQVGTDKSRDIVESIDSSERVLKYQDDILQLKVLLTNLEE 1442
Query: 417 FFQETFKNENERKNQNTVLRRHIYSEEDSLVSLNKN 524
+ ++E + N VL+ + + ++SL +N
Sbjct: 1443 QVDDLRSTKDEVEILNMVLKSKLEEQRTEILSLLQN 1478
>05_04_0322 +
20239793-20240127,20240176-20240728,20241317-20241425,
20244456-20244723,20244943-20245197,20245594-20246539
Length = 821
Score = 28.7 bits (61), Expect = 3.9
Identities = 18/69 (26%), Positives = 28/69 (40%)
Frame = +3
Query: 240 DTESVKDFQQKLKTGRRMVIVGNGGIASDIVHATSGIEKVWVIRDDYISATFIDPGAAEF 419
D+ K L TG + G A SGI ++ IR+ + ++D +
Sbjct: 404 DSSEAKTVAVLLNTGNLALPYLTDGKYDPSTGAFSGIPEMTPIRNSIYAFQYVDNNEEAY 463
Query: 420 FQETFKNEN 446
F T KN+N
Sbjct: 464 FMVTVKNDN 472
>01_06_1149 -
34901338-34901466,34901707-34901838,34901940-34902290,
34902301-34902619,34902756-34902784,34903641-34903715,
34903799-34903900,34904002-34904120,34904752-34904875,
34904976-34905026,34905143-34905241,34905751-34905861
Length = 546
Score = 28.3 bits (60), Expect = 5.2
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +3
Query: 495 EDSLVSLNKNLKSAALGPDWYRKLENIKSDRGVQELEI 608
+D L S +K L P+W + + +D QELEI
Sbjct: 275 DDKLPSKKTTVKRGNLNPEWNEDFKFVVTDPETQELEI 312
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,923,389
Number of Sequences: 37544
Number of extensions: 310419
Number of successful extensions: 807
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 807
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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