Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0271
         (621 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20017| Best HMM Match : No HMM Matches (HMM E-Value=.)              52   4e-07
SB_30623| Best HMM Match : Pyr_redox_2 (HMM E-Value=1.5e-27)           39   0.003
SB_55554| Best HMM Match : AAA (HMM E-Value=0.022)                     29   2.3  
SB_58255| Best HMM Match : zf-C2H2 (HMM E-Value=2.3)                   28   5.3  
SB_30233| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_20844| Best HMM Match : Ion_trans (HMM E-Value=0)                   28   7.0  
SB_34774| Best HMM Match : DUF1610 (HMM E-Value=1.4)                   27   9.3  

>SB_20017| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 386

 Score = 52.0 bits (119), Expect = 4e-07
 Identities = 22/43 (51%), Positives = 29/43 (67%)
 Frame = +3

Query: 294 VIVGNGGIASDIVHATSGIEKVWVIRDDYISATFIDPGAAEFF 422
           +IVGNGGIA ++ +   G E +W I+D+ I  TF D GAA FF
Sbjct: 1   MIVGNGGIALELAYELRGCEVIWAIKDNAIGNTFFDKGAASFF 43


>SB_30623| Best HMM Match : Pyr_redox_2 (HMM E-Value=1.5e-27)
          Length = 440

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 25/93 (26%), Positives = 45/93 (48%), Gaps = 5/93 (5%)
 Frame = +3

Query: 105 LDTEKQKALTDKGVHIQYDVICICTGGIPR---LISDSKNS--KRVLGIRDTESVKDFQQ 269
           +D + +K   + G  + YD + + TGG P+   +   S N+  K+V   R  E  +   +
Sbjct: 211 VDPKDKKIQLEDGTLVSYDKLLLATGGAPKSLPIFEKSSNNIKKKVTLFRKVEDFQLLDK 270

Query: 270 KLKTGRRMVIVGNGGIASDIVHATSGIEKVWVI 368
             K  + +VI+G G + S++  A    E V V+
Sbjct: 271 ITKGAKSIVIIGGGFLGSELACALGHKEGVKVV 303


>SB_55554| Best HMM Match : AAA (HMM E-Value=0.022)
          Length = 1681

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = +3

Query: 273 LKTGRRMVIVGNGGIASDIVHATSGIEKVWVIRDDYISATF 395
           L T  R V+  + G+AS + H +SGI +V  +   Y+SA F
Sbjct: 522 LSTNCRSVLTADYGVASQLSHPSSGIHEVQTL-IRYMSAIF 561


>SB_58255| Best HMM Match : zf-C2H2 (HMM E-Value=2.3)
          Length = 213

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
 Frame = -1

Query: 207 NLKLVLVSLQYKYKLRHIVYEH---LCLSKLSAFQYQDVLVNHI 85
           N   VL+    K+ L    YEH    C+S L  F  + VL NH+
Sbjct: 11  NQHCVLIKDFNKFMLNQTKYEHKKHFCMSCLQCFSSERVLSNHV 54


>SB_30233| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 807

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 4/116 (3%)
 Frame = +3

Query: 114 EKQKALTDKGVHIQYDVICICTG---GIPRLISDSKNSKRVLGIRDTESVKD-FQQKLKT 281
           E+ K +   G  +  DV+  CTG    +P L  D K++    G   T+  K+ F  +L  
Sbjct: 307 EENKVVFTDGSKVDADVVVCCTGYTINLPFLSDDVKSTVVEEGTNKTKLFKNVFSPQL-- 364

Query: 282 GRRMVIVGNGGIASDIVHATSGIEKVWVIRDDYISATFIDPGAAEFFQETFKNENE 449
           G  +  +G    AS  +   S I+  W    +    T   P  A+  QE  K E +
Sbjct: 365 GPSIAFIGFSQPASGGLLPMSEIQARWF--SELCKGTVKLPD-AKIMQEIMKEEQQ 417


>SB_20844| Best HMM Match : Ion_trans (HMM E-Value=0)
          Length = 2675

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
 Frame = -1

Query: 249  ILYL*CPVLFCYFWNLKLVL--VSLQYKYKLRHIVY--EHLCLSKLSAFQY 109
            + Y    + FC F+ L LVL  V+L Y+ ++R  V+  E L   K +A  Y
Sbjct: 1433 VFYFVGSIFFCSFYLLNLVLAVVALSYEQEIRAAVHEKERLWKEKRTAVSY 1483


>SB_34774| Best HMM Match : DUF1610 (HMM E-Value=1.4)
          Length = 576

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +2

Query: 242 YRICERLSTKIEDRP*N-GYSWKWRYCIRYSSC 337
           +RIC     K++  P   G + +W YC RY  C
Sbjct: 136 HRICFENHRKVKSHPDGRGKTDRWSYCQRYHRC 168


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,479,763
Number of Sequences: 59808
Number of extensions: 368886
Number of successful extensions: 2395
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2292
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2394
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)