Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0271
         (621 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54327-8|CAA91121.2|  451|Caenorhabditis elegans Hypothetical pr...    91   8e-19
L40996-1|AAA86431.1|  593|Caenorhabditis elegans GTP-binding pro...    32   0.29 
AF125969-2|AAD14761.1|  613|Caenorhabditis elegans Caenorhabditi...    32   0.29 
Z81030-2|CAB02704.2|  343|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z71258-4|CAA95783.2|  423|Caenorhabditis elegans Hypothetical pr...    29   3.5  
AL031627-21|CAA20970.1|  326|Caenorhabditis elegans Hypothetical...    28   6.2  
Z49889-2|CAD44149.1|  553|Caenorhabditis elegans Hypothetical pr...    27   8.2  
Z49889-1|CAA90066.2|  591|Caenorhabditis elegans Hypothetical pr...    27   8.2  
AF101318-6|AAC69348.2|  946|Caenorhabditis elegans Hypothetical ...    27   8.2  
AC024759-3|AAK68433.1|  355|Caenorhabditis elegans Hypothetical ...    27   8.2  
AC024759-2|AAM97964.1|  376|Caenorhabditis elegans Hypothetical ...    27   8.2  
AC024759-1|AAK73907.1|  376|Caenorhabditis elegans Hypothetical ...    27   8.2  

>Z54327-8|CAA91121.2|  451|Caenorhabditis elegans Hypothetical
           protein C26D10.3 protein.
          Length = 451

 Score = 90.6 bits (215), Expect = 8e-19
 Identities = 46/167 (27%), Positives = 87/167 (52%), Gaps = 2/167 (1%)
 Frame = +3

Query: 75  LEIIYDSLKHLDTEKQKALTDKGVHIQYDVICICTGGIPRLISDSKNSKRVLGIRDTESV 254
           +  + D++   D+ K +        ++YD +CI TG  P+   +    +R++ +RDT+S 
Sbjct: 71  IRFLNDTVVTWDSSKNEIHLQNNEKLKYDKLCIATGSRPKFQKELGIDRRIVFLRDTQSA 130

Query: 255 KDFQQKLKTGRRMVIVGNGGIASDIVHATSGIEKVWVIRDDYISATFIDPGAAEFFQETF 434
              + KLK  + ++IVGNGGIA++++      +  W+I+D +I A+F      +F ++  
Sbjct: 131 IQLKTKLKNAKNILIVGNGGIATELIFELKTFDVTWLIKDPWICASFFPEDIEQFIEKRL 190

Query: 435 KNENERKNQNTVLRRHI-YSEEDSLVSLNKNLKSA-ALGPDWYRKLE 569
                  N++   ++H+ +      VS N N  S  ALGPDW  +++
Sbjct: 191 LKGRIDGNKHDGQQKHLQHVAASESVSENMNNPSGPALGPDWCSQID 237


>L40996-1|AAA86431.1|  593|Caenorhabditis elegans GTP-binding
           protein protein.
          Length = 593

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 26/82 (31%), Positives = 35/82 (42%)
 Frame = +3

Query: 168 CICTGGIPRLISDSKNSKRVLGIRDTESVKDFQQKLKTGRRMVIVGNGGIASDIVHATSG 347
           C+   G P + S+SKN K  L   D +   D Q  LK   ++  VG   I        S 
Sbjct: 66  CLVRLGAP-INSNSKNPKSGLSEEDLDKAADAQ--LKILEKIPAVGTKVIRRKQTGGGSL 122

Query: 348 IEKVWVIRDDYISATFIDPGAA 413
             +VW+IRD      FI+   A
Sbjct: 123 FTEVWIIRDPPTEKDFIEARVA 144


>AF125969-2|AAD14761.1|  613|Caenorhabditis elegans Caenorhabditis
           gtp-binding proteinprotein 1 protein.
          Length = 613

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 26/82 (31%), Positives = 35/82 (42%)
 Frame = +3

Query: 168 CICTGGIPRLISDSKNSKRVLGIRDTESVKDFQQKLKTGRRMVIVGNGGIASDIVHATSG 347
           C+   G P + S+SKN K  L   D +   D Q  LK   ++  VG   I        S 
Sbjct: 66  CLVELGAP-INSNSKNPKSGLSEEDLDKAADAQ--LKILEKIPAVGTKVIRRKQTGGGSL 122

Query: 348 IEKVWVIRDDYISATFIDPGAA 413
             +VW+IRD      FI+   A
Sbjct: 123 FTEVWIIRDPPTEKDFIEARVA 144


>Z81030-2|CAB02704.2|  343|Caenorhabditis elegans Hypothetical
           protein C01G10.2 protein.
          Length = 343

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = -1

Query: 291 FYGLSSIFVESLSQILYL*CPVLFCYFWNLKLVLV--SLQYKYKLRHIVYEHLCLSKLSA 118
           F    S+++ S ++   +  P+ F + W LKL LV   L Y  ++ ++  EHL  S+ S 
Sbjct: 106 FNEFQSVYL-SFNRFFVMLFPLKFSWLWGLKLTLVLHILYYINRIWNVATEHLSRSENSN 164

Query: 117 F 115
           F
Sbjct: 165 F 165


>Z71258-4|CAA95783.2|  423|Caenorhabditis elegans Hypothetical
           protein C01H6.4 protein.
          Length = 423

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 114 EKQKALTDKGVHIQYDVICICTG 182
           ++   +TD+G H+  DVI +CTG
Sbjct: 223 DEHGVVTDEGDHVPADVIIVCTG 245


>AL031627-21|CAA20970.1|  326|Caenorhabditis elegans Hypothetical
           protein Y102A5C.33 protein.
          Length = 326

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 23/68 (33%), Positives = 33/68 (48%)
 Frame = -1

Query: 279 SSIFVESLSQILYL*CPVLFCYFWNLKLVLVSLQYKYKLRHIVYEHLCLSKLSAFQYQDV 100
           S I ++S   I YL  P  +CY  NL+      ++K K  HIV     + KLS F +   
Sbjct: 18  SGIALQSCLIISYLTLP-FYCYVHNLR------RHKEKNLHIVQSFYKIVKLSYFVFTFF 70

Query: 99  LVNHI*FL 76
           +V  I F+
Sbjct: 71  VVTSIMFM 78


>Z49889-2|CAD44149.1|  553|Caenorhabditis elegans Hypothetical
           protein T06H11.1b protein.
          Length = 553

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 2/100 (2%)
 Frame = +3

Query: 105 LDTEKQKALTDKGVHIQYDVICICTGGIPRLISDSKNSKRVLGIRDTESVKDFQQKLKTG 284
           +DT+  K  +     +   ++ I    I + +S++         R    VK +  +++ G
Sbjct: 273 VDTDVGKVFSVAFALVGIPLMFITAADIGKFLSETLLQFVSFWNRSVRKVKQWMSRIRHG 332

Query: 285 RRMVIVGNGG--IASDIVHATSGIEKVWVIRDDYISATFI 398
           RR  +   GG     DI+      EK+W     Y+S   I
Sbjct: 333 RRKSLQSTGGPNDTLDILGVDGTEEKLWFPIGAYVSCICI 372


>Z49889-1|CAA90066.2|  591|Caenorhabditis elegans Hypothetical
           protein T06H11.1a protein.
          Length = 591

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 22/100 (22%), Positives = 40/100 (40%), Gaps = 2/100 (2%)
 Frame = +3

Query: 105 LDTEKQKALTDKGVHIQYDVICICTGGIPRLISDSKNSKRVLGIRDTESVKDFQQKLKTG 284
           +DT+  K  +     +   ++ I    I + +S++         R    VK +  +++ G
Sbjct: 311 VDTDVGKVFSVAFALVGIPLMFITAADIGKFLSETLLQFVSFWNRSVRKVKQWMSRIRHG 370

Query: 285 RRMVIVGNGG--IASDIVHATSGIEKVWVIRDDYISATFI 398
           RR  +   GG     DI+      EK+W     Y+S   I
Sbjct: 371 RRKSLQSTGGPNDTLDILGVDGTEEKLWFPIGAYVSCICI 410


>AF101318-6|AAC69348.2|  946|Caenorhabditis elegans Hypothetical
           protein Y73C8C.8 protein.
          Length = 946

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/47 (31%), Positives = 20/47 (42%)
 Frame = +3

Query: 99  KHLDTEKQKALTDKGVHIQYDVICICTGGIPRLISDSKNSKRVLGIR 239
           K+L T      +   VH+Q D IC     IP  I +     R+ G R
Sbjct: 483 KNLKTLPNDVFSGAIVHLQIDCICRRISKIPAFIHNQLACSRIFGYR 529


>AC024759-3|AAK68433.1|  355|Caenorhabditis elegans Hypothetical
           protein Y37E11AR.3a protein.
          Length = 355

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
 Frame = +3

Query: 36  KQRPPPWQ-KIHPNLE---IIYDSLKHLDTEKQKALTDKGVHIQYDV 164
           + RPPP + +  P+L+   + +D   HLD +  K +TD+   I++ V
Sbjct: 121 RYRPPPMKLEDLPDLDFAVVSHDHYDHLDADAVKKITDRNPQIKWFV 167


>AC024759-2|AAM97964.1|  376|Caenorhabditis elegans Hypothetical
           protein Y37E11AR.3c protein.
          Length = 376

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
 Frame = +3

Query: 36  KQRPPPWQ-KIHPNLE---IIYDSLKHLDTEKQKALTDKGVHIQYDV 164
           + RPPP + +  P+L+   + +D   HLD +  K +TD+   I++ V
Sbjct: 142 RYRPPPMKLEDLPDLDFAVVSHDHYDHLDADAVKKITDRNPQIKWFV 188


>AC024759-1|AAK73907.1|  376|Caenorhabditis elegans Hypothetical
           protein Y37E11AR.3b protein.
          Length = 376

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
 Frame = +3

Query: 36  KQRPPPWQ-KIHPNLE---IIYDSLKHLDTEKQKALTDKGVHIQYDV 164
           + RPPP + +  P+L+   + +D   HLD +  K +TD+   I++ V
Sbjct: 142 RYRPPPMKLEDLPDLDFAVVSHDHYDHLDADAVKKITDRNPQIKWFV 188


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,277,019
Number of Sequences: 27780
Number of extensions: 303758
Number of successful extensions: 834
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 832
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)