Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0271
         (621 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    26   0.34 
DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.              21   7.3  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   9.7  

>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 13/46 (28%), Positives = 20/46 (43%)
 Frame = +3

Query: 303 GNGGIASDIVHATSGIEKVWVIRDDYISATFIDPGAAEFFQETFKN 440
           GNGG+ S +V A   +  +  + DD   A  +   + E F     N
Sbjct: 185 GNGGLVSLVVQAMDPVNTIVYMADDKGDALIVYQNSDESFHRLTSN 230


>DQ435332-1|ABD92647.1|  135|Apis mellifera OBP15 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = +3

Query: 249 SVKDFQQKLKTGRRMVIVGNGGIASDIVH 335
           S+KDFQ  ++ G + + +   GI   I++
Sbjct: 18  SIKDFQNAIRMG-QSICMAKTGINKQIIN 45


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/25 (32%), Positives = 18/25 (72%)
 Frame = +1

Query: 178 LEGYQD*FQIPKIAKEYWALEIQNL 252
           +EG+++   IP++ +E+  L +Q+L
Sbjct: 343 VEGWENRATIPELNEEFRDLRLQDL 367


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,660
Number of Sequences: 438
Number of extensions: 3794
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)