Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0270
         (539 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1EBA2 Cluster: Putative uncharacterized protein; n=1; ...    36   0.79 
UniRef50_UPI000065D7D6 Cluster: minor histocompatibility antigen...    32   7.3  

>UniRef50_Q1EBA2 Cluster: Putative uncharacterized protein; n=1;
           Coccidioides immitis|Rep: Putative uncharacterized
           protein - Coccidioides immitis
          Length = 1071

 Score = 35.5 bits (78), Expect = 0.79
 Identities = 18/48 (37%), Positives = 28/48 (58%)
 Frame = +2

Query: 377 IHSI**ALPAPKRQ*SSGCSVTIPPSPPGSLRQVVCLRFGYVMLDDII 520
           I+S+  ALP PKR+ SS  S+ +  S P S+R  +C+     M+  I+
Sbjct: 818 INSVLAALPRPKREPSSSASIFLDSSVPPSVRDEICIAVRCAMIAAIL 865


>UniRef50_UPI000065D7D6 Cluster: minor histocompatibility antigen
           HA-1; n=1; Takifugu rubripes|Rep: minor
           histocompatibility antigen HA-1 - Takifugu rubripes
          Length = 1225

 Score = 32.3 bits (70), Expect = 7.3
 Identities = 15/26 (57%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
 Frame = +2

Query: 404 APKRQ*SSGCSVTIP--PSPPGSLRQ 475
           AP+ Q   GCSVT+P  P PPGS+ Q
Sbjct: 157 APRPQSRGGCSVTLPVTPHPPGSVAQ 182


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 555,320,747
Number of Sequences: 1657284
Number of extensions: 11094166
Number of successful extensions: 20388
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 19863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20368
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 34572633001
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)