Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0270
         (539 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0319 + 2440129-2440661,2440875-2440902                           28   4.1  
10_08_0931 - 21647562-21649037                                         28   4.1  
02_05_0386 - 28530882-28531172,28531261-28531413,28531500-28532483     28   4.1  
01_06_0654 + 30911416-30912071,30913664-30914348                       28   4.1  
03_05_0492 - 24874517-24874960,24875672-24875815,24876214-248762...    27   9.6  

>12_01_0319 + 2440129-2440661,2440875-2440902
          Length = 186

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = +2

Query: 446 PPSPPGSLRQVVCLRFGYVMLDDIIFISRI 535
           PP PP   R     R G V L DI F+ R+
Sbjct: 48  PPPPPPPPRAAAAPRLGAVSLSDIRFVRRL 77


>10_08_0931 - 21647562-21649037
          Length = 491

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -2

Query: 490 AQANYLSK*TRGGGGNSHATTTTS-LPFRCREG 395
           A+   +S+ T GGGG  H T   S +P+R R G
Sbjct: 193 ARPRRISQDTPGGGGGGHETVLPSPIPWRSRSG 225


>02_05_0386 - 28530882-28531172,28531261-28531413,28531500-28532483
          Length = 475

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 132 DCQWNTKSKIRFSDLPIL 79
           DC W  +S + FSD+P L
Sbjct: 250 DCSWTPQSSVAFSDMPAL 267


>01_06_0654 + 30911416-30912071,30913664-30914348
          Length = 446

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = -3

Query: 462 PGGEGGIVTLQPLLHCRFGAGR 397
           PGG  G    QP+  CRF AGR
Sbjct: 192 PGGAAGGGQRQPVFTCRFSAGR 213


>03_05_0492 -
           24874517-24874960,24875672-24875815,24876214-24876282,
           24876452-24876570,24878292-24878580
          Length = 354

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 4/47 (8%)
 Frame = -2

Query: 535 DAGNKYNIVQHHVAEAQANYLS--K*TRGGGGN--SHATTTTSLPFR 407
           DA + YN + HH+       L     + GGGG+  SH+    + PFR
Sbjct: 293 DAADHYNSIDHHLRTPFFTPLPIIMDSGGGGGDHASHSAAAVAAPFR 339


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,032,919
Number of Sequences: 37544
Number of extensions: 312806
Number of successful extensions: 615
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 595
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)