Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0270
         (539 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20108| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.1  
SB_55804| Best HMM Match : Acyl_transf_1 (HMM E-Value=1.2e-07)         30   1.1  
SB_42914| Best HMM Match : Chlam_PMP (HMM E-Value=3.3e-10)             28   4.2  
SB_10518| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.6  

>SB_20108| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 610

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 171 PVIYLRCRSEEFCDCQWNTKSKIR 100
           PV+Y+RC   ++C   W+ KS  R
Sbjct: 359 PVLYIRCEDPKYCPVLWHYKSSDR 382


>SB_55804| Best HMM Match : Acyl_transf_1 (HMM E-Value=1.2e-07)
          Length = 1306

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 171  PVIYLRCRSEEFCDCQWNTKSKIR 100
            PV+Y+RC   ++C   W+ KS  R
Sbjct: 1128 PVLYIRCEDPKYCPVLWHYKSSDR 1151


>SB_42914| Best HMM Match : Chlam_PMP (HMM E-Value=3.3e-10)
          Length = 1211

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
 Frame = -1

Query: 461 QGGRGE*SRYNHYF---IAVSVPGGLTI*NGYTYRRLKGKRD*ATITALYINESSIIKGG 291
           QG   E S +N YF    AV + GG+     +++ + KG        + +++ ++  +GG
Sbjct: 484 QGPDMEISIHNSYFNNNSAVELNGGV-----WSFDQSKGAVAINITDSFFVSNTAHARGG 538

Query: 290 NLCIWTKKCYRYVNTD*F 237
            +C+W  K   +V+   F
Sbjct: 539 AICVWQNKVRLHVSNSVF 556


>SB_10518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 328

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 295 VAICAFGQKNVIDMSIQIDLNIIVSFKEYGSKPAL 191
           V I +FG K    +S  +  N+++SF + G KP L
Sbjct: 157 VGIVSFGDKTKQILSRTLGKNMLMSFMDVGKKPPL 191


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,220,268
Number of Sequences: 59808
Number of extensions: 348202
Number of successful extensions: 613
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1227799733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)