Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0269
         (590 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00006CC8D1 Cluster: hypothetical protein TTHERM_0029...    33   5.0  
UniRef50_Q6RCQ4 Cluster: SidH; n=2; Legionella pneumophila|Rep: ...    33   5.0  

>UniRef50_UPI00006CC8D1 Cluster: hypothetical protein TTHERM_00292060;
            n=1; Tetrahymena thermophila SB210|Rep: hypothetical
            protein TTHERM_00292060 - Tetrahymena thermophila SB210
          Length = 1106

 Score = 33.1 bits (72), Expect = 5.0
 Identities = 21/55 (38%), Positives = 30/55 (54%)
 Frame = -1

Query: 275  SKKKHFL*RCFYKDNINPCPNKYVIHYDIEKPT*FQDRL*QL*IFLNISKISSSD 111
            ++KK+ L   F KD I+ C NKY I+Y  EK   F +   QL   L +++   SD
Sbjct: 845  TRKKYHL-NTFQKDIISICQNKYAINYLQEKKYEFNNLEEQLTNILTMNEFDDSD 898


>UniRef50_Q6RCQ4 Cluster: SidH; n=2; Legionella pneumophila|Rep: SidH
            - Legionella pneumophila
          Length = 2225

 Score = 33.1 bits (72), Expect = 5.0
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = -1

Query: 146  IFLNISKISSSDLDVNKTIREVNPFEQKKKKKTRD 42
            I LN + +  + +D+N T++E+N    ++ KKTRD
Sbjct: 1774 ILLNNNPLKEAYVDLNNTLKEINTLLDEENKKTRD 1808


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 528,678,776
Number of Sequences: 1657284
Number of extensions: 9747396
Number of successful extensions: 21000
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 20440
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20992
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 41073165837
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)