Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0269
         (590 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    29   0.67 
SPAC13G6.13 ||SPAC24B11.02|sequence orphan|Schizosaccharomyces p...    27   1.5  
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.3  
SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces pom...    25   8.3  
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc...    25   8.3  

>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 28.7 bits (61), Expect = 0.67
 Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
 Frame = -1

Query: 146 IFLNISKISSSDLDVNKTIREV---NPFEQKKKKK 51
           + LNIS +SS+DL++ KT   V   N  E+K  KK
Sbjct: 775 LHLNISSVSSTDLEIWKTPEGVLWDNVLEKKSSKK 809


>SPAC13G6.13 ||SPAC24B11.02|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 115

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
 Frame = -2

Query: 310 LTITFFMLNKFVLKKSIFCEGVFIKIILIPV--QINTLFITILKNPH 176
           L  TFFM+ ++ L   ++ +  +IKII+  V  ++NT  I I +N H
Sbjct: 55  LKCTFFMIEEWHLLAILYDKSKYIKIIICSVLLKLNTTVI-IRRNTH 100


>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 576 PISRFFQY*IAHLLRKAIYRLYNITLRPMQ 487
           PI+R F Y +A L+R +I +  +  L P+Q
Sbjct: 494 PIARRFLYLLAPLMRPSIAQCSDTLLNPIQ 523


>SPAC22E12.05c |rer1||Rer1 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 184

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +2

Query: 476 WCSACIGLSVMLYNLYIAFL 535
           W   C  L++ L NL++AFL
Sbjct: 57  WYIVCYTLAIYLLNLFLAFL 76


>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 940

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 58  FFFCSKGLTSRMVLFTSRSDDDILEIFRK 144
           F  C K ++  M L +SR+ +DIL  F+K
Sbjct: 328 FDVCEKAISIIMGLVSSRNVEDILNHFQK 356


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,299,366
Number of Sequences: 5004
Number of extensions: 45470
Number of successful extensions: 97
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)