Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0269
         (590 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52861| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_19122| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.1  
SB_20368| Best HMM Match : zf-DHHC (HMM E-Value=2.6e-12)               28   6.6  
SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022)                 27   8.7  

>SB_52861| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1487

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/47 (31%), Positives = 29/47 (61%)
 Frame = -3

Query: 141 SEYLQDIIIRS*CKQDHSGSQPFRTKKKKKNSRLVLSLSLPRAEFLQ 1
           +E+ Q  I R+ C+ +HS +   RT  + ++S++ +  +  RAE+LQ
Sbjct: 804 AEHSQATICRTDCRAEHSQATICRTDCRAEHSQVAICRTDCRAEYLQ 850


>SB_19122| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 394

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 83  LPEWSCLHQDLMMISWRYSEKSIIVKAYLEIMWVFQYR 196
           LPE     ++L  ++W Y    +I  AYL+I+   Q R
Sbjct: 71  LPEGQKYLKELECLTWNYGRPHVIADAYLKILTELQIR 108


>SB_20368| Best HMM Match : zf-DHHC (HMM E-Value=2.6e-12)
          Length = 288

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -1

Query: 473 KECFKIGVFSLLRASHCVLCGN 408
           K CF   +F   RASHC +C N
Sbjct: 145 KFCFTCKIFRPPRASHCSMCDN 166


>SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022)
          Length = 1421

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 107 DVNKTIREVNPFEQKKKKKTRD*FSLSLSLVP 12
           DV K     +PFE K K ++RD  SL++   P
Sbjct: 862 DVPKMAEITDPFENKLKNESRDAMSLNMGRSP 893


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,172,064
Number of Sequences: 59808
Number of extensions: 293118
Number of successful extensions: 611
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 582
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 611
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1434459094
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)