Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0269
         (590 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    25   0.56 
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   3.0  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   6.8  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 25.0 bits (52), Expect = 0.56
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 333 CCRGPFLDLLKSNNSLIHYFSETLTVSAEHAVGS 434
           CC+G  +DLLK  +  I+ F+ +L +S +   G+
Sbjct: 458 CCKGYCMDLLKELSKTIN-FTYSLALSPDGQFGN 490


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +3

Query: 168 LKLCGFFNIVMNNVFIWTGINIIF 239
           L +C FF ++   +FI+   N  F
Sbjct: 90  LAICDFFMMIKTPIFIYNSFNTGF 113


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 6.8
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 226 IPVQINTLFITILK 185
           I V+ NT+FI ILK
Sbjct: 332 ISVESNTMFINILK 345


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 159,538
Number of Sequences: 438
Number of extensions: 3168
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17237673
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)