Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0268
         (627 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    30   0.31 
SPBC16G5.01 |rpn12|mts3, SPBC342.07|19S proteasome regulatory su...    27   2.2  
SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyc...    27   2.2  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    25   6.8  
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc...    25   9.0  

>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1150

 Score = 29.9 bits (64), Expect = 0.31
 Identities = 22/82 (26%), Positives = 35/82 (42%)
 Frame = +1

Query: 82   KMPLTTIKMTWNIVGRESGKVRNSHQEFSLKIDDKLVTSHEDVANAFEKFFSDIPVSTTT 261
            +M  TTI+  W I  +    + N   E +L     L  S ++      + F + P  TTT
Sbjct: 1021 EMQSTTIEYIWKIPQKV---LLNKPTEITLTFLRSLTHSKKEKQGQSFEIFYNFPAYTTT 1077

Query: 262  SLNSSPTAAEILLHKHVNKCNE 327
             L + PT  +I+  K+     E
Sbjct: 1078 ILFAGPTQRKIVWEKNQTTAQE 1099


>SPBC16G5.01 |rpn12|mts3, SPBC342.07|19S proteasome regulatory
           subunit Rpn12|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 270

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +1

Query: 160 EFSLKIDDKLVTSHEDVANAFEKFFSDIPVSTTTSL 267
           EFS  +   +     ++A   EK +S+IP+S  TSL
Sbjct: 159 EFSYFMKIVMSMVRNEIATCAEKVYSEIPLSNATSL 194


>SPBC11C11.01 ||SPBC17D1.08|RNA-binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 493

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = +1

Query: 226 KFFSDIPVSTTTSLNSSPTAAE 291
           +F S IP+ST TS +SSP   E
Sbjct: 444 EFISQIPMSTETSSSSSPQPTE 465


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -1

Query: 147 SDFSTFSTHDVPSHLYRCQGHFLLNHLNVKILPPAARGSTSLER 16
           S  S  ++H   S ++    H   +  +   LPP+A  STSL+R
Sbjct: 613 STLSMTTSHLSSSSVHSSSAHSSSSRSSSMSLPPSAGSSTSLQR 656


>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 503

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = +1

Query: 505 PDLMKHSKVIPFFKSGSTDDPSNYRPISVLPTLSKIFEKII 627
           PDL  +      F      + + Y PI+VLP+LS++ +  I
Sbjct: 344 PDLTGYITEGQIFVDRQLHNNAIYPPINVLPSLSRLMKSAI 384


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,373,914
Number of Sequences: 5004
Number of extensions: 45403
Number of successful extensions: 153
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)