Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0268
         (627 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical pr...    47   1e-05
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans...    47   1e-05
AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical ...    47   1e-05
AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical ...    34   0.096
AF003140-6|AAD47122.2| 1145|Caenorhabditis elegans Hypothetical ...    30   1.6  
AL110485-17|CAB60365.1|  272|Caenorhabditis elegans Hypothetical...    29   3.6  
AL110485-16|CAB60364.1|  295|Caenorhabditis elegans Hypothetical...    29   3.6  
Z70680-2|CAA94573.1|  424|Caenorhabditis elegans Hypothetical pr...    27   8.3  

>U58735-1|AAC48148.1|  891|Caenorhabditis elegans Hypothetical
           protein F20B4.7 protein.
          Length = 891

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 26/71 (36%), Positives = 34/71 (47%)
 Frame = +1

Query: 415 ISVKILKSVIDIIAPHLVSIFNDCIRCGVFPDLMKHSKVIPFFKSGSTDDPSNYRPISVL 594
           IS   LKS  D +   +   FN  +     P   K SK    FK G  ++  NYRPI +L
Sbjct: 399 ISADFLKSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTLIFKKGDRENLENYRPICLL 458

Query: 595 PTLSKIFEKII 627
           P L K+F K +
Sbjct: 459 PVLYKVFTKCL 469


>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
           transcriptase protein.
          Length = 1066

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 26/71 (36%), Positives = 34/71 (47%)
 Frame = +1

Query: 415 ISVKILKSVIDIIAPHLVSIFNDCIRCGVFPDLMKHSKVIPFFKSGSTDDPSNYRPISVL 594
           IS   LKS  D +   +   FN  +     P   K SK    FK G  ++  NYRPI +L
Sbjct: 570 ISADFLKSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTLIFKKGDRENLENYRPICLL 629

Query: 595 PTLSKIFEKII 627
           P L K+F K +
Sbjct: 630 PVLYKVFTKCL 640


>AF025462-7|AAB71003.1|  805|Caenorhabditis elegans Hypothetical
           protein K10F12.5 protein.
          Length = 805

 Score = 46.8 bits (106), Expect = 1e-05
 Identities = 26/71 (36%), Positives = 34/71 (47%)
 Frame = +1

Query: 415 ISVKILKSVIDIIAPHLVSIFNDCIRCGVFPDLMKHSKVIPFFKSGSTDDPSNYRPISVL 594
           IS   LKS  D +   +   FN  +     P   K SK    FK G  ++  NYRPI +L
Sbjct: 309 ISADFLKSCHDNVIDLITDRFNRYLHSRNVPKPWKTSKTTLIFKKGDRENLENYRPICLL 368

Query: 595 PTLSKIFEKII 627
           P L K+F K +
Sbjct: 369 PVLYKVFTKCL 379


>AF100669-1|AAK39265.1|  931|Caenorhabditis elegans Hypothetical
           protein R11E3.3 protein.
          Length = 931

 Score = 33.9 bits (74), Expect = 0.096
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 3/58 (5%)
 Frame = +1

Query: 463 LVSIFNDCIRCGVFPDLMKHSKVIPFFKSGSTDDP---SNYRPISVLPTLSKIFEKII 627
           L  ++N  +   + PD  K + VI   K     DP   S+YRPIS+L  ++K+ EK I
Sbjct: 367 LAYLYNVSLSTNIIPDKWKKANVIMIPKPKK--DPAIASSYRPISLLSPIAKLLEKAI 422


>AF003140-6|AAD47122.2| 1145|Caenorhabditis elegans Hypothetical
           protein C44E4.7 protein.
          Length = 1145

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +1

Query: 172 KIDDKLVTSHEDVANAFEKFFSDIPVSTTTSLNSSPTAAEILLHKH 309
           ++ +   + H+DVA AF    SDI + T +   S+  +  +  H+H
Sbjct: 738 QVSENQPSEHDDVAKAFMLLDSDIHLKTKSRKRSTQNSVAVGSHRH 783


>AL110485-17|CAB60365.1|  272|Caenorhabditis elegans Hypothetical
           protein Y46G5A.22b protein.
          Length = 272

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = -1

Query: 606 TQRREY*NRSIVRGVIST--TRFKKRNHFTMFH*VRKYTTPNTVIKNTNKMRSNNVYYRL 433
           T RR +  +S  RG +S+  TRF         +  RK +   T    T++ + NN YY +
Sbjct: 5   TTRRSHSEKSSSRGSMSSPPTRFYPSEDSESIYSTRKCSKRTTTTATTDEEKPNNSYY-I 63

Query: 432 QNLY 421
            ++Y
Sbjct: 64  DDIY 67


>AL110485-16|CAB60364.1|  295|Caenorhabditis elegans Hypothetical
           protein Y46G5A.22a protein.
          Length = 295

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
 Frame = -1

Query: 606 TQRREY*NRSIVRGVIST--TRFKKRNHFTMFH*VRKYTTPNTVIKNTNKMRSNNVYYRL 433
           T RR +  +S  RG +S+  TRF         +  RK +   T    T++ + NN YY +
Sbjct: 5   TTRRSHSEKSSSRGSMSSPPTRFYPSEDSESIYSTRKCSKRTTTTATTDEEKPNNSYY-I 63

Query: 432 QNLY 421
            ++Y
Sbjct: 64  DDIY 67


>Z70680-2|CAA94573.1|  424|Caenorhabditis elegans Hypothetical
           protein C25G4.4 protein.
          Length = 424

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 18/65 (27%), Positives = 28/65 (43%)
 Frame = +1

Query: 127 RESGKVRNSHQEFSLKIDDKLVTSHEDVANAFEKFFSDIPVSTTTSLNSSPTAAEILLHK 306
           R+S K        S+    ++V         FE+FF D P   + S N  PT++    +K
Sbjct: 209 RKSAKKARGRPRGSVNKPRQMVKMEPQDDRFFEEFFIDAPPLQSMSSNEEPTSS----NK 264

Query: 307 HVNKC 321
             N+C
Sbjct: 265 ESNEC 269


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,018,615
Number of Sequences: 27780
Number of extensions: 250786
Number of successful extensions: 771
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 753
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)