Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0268
         (627 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      25   0.80 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   7.4  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   9.8  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 24.6 bits (51), Expect = 0.80
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +3

Query: 42  LQAAKSLHLSDLIKNAPDNDKDDLEH 119
           L+ A+ L +S L + A   D+D+L H
Sbjct: 104 LKTAEVLRVSGLTQQADQTDRDELSH 129


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/40 (22%), Positives = 18/40 (45%)
 Frame = +1

Query: 196 SHEDVANAFEKFFSDIPVSTTTSLNSSPTAAEILLHKHVN 315
           SHE      +K    +  S+TT+ +   +    ++  H+N
Sbjct: 307 SHESQCPMLQKLEKPVLSSSTTTTSPMTSTKSTIVRNHLN 346


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 6/24 (25%), Positives = 13/24 (54%)
 Frame = -2

Query: 164 NSWWLFLTFPLSLPTMFQVIFIVV 93
           NSWW  +   +   T+F  + +++
Sbjct: 186 NSWWALILVIVPCLTLFGNVLVIL 209


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,397
Number of Sequences: 438
Number of extensions: 3299
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)