Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0268
         (627 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g79570.1 68414.m09276 protein kinase family protein low simil...    31   0.83 
At1g56520.1 68414.m06499 disease resistance protein (TIR-NBS-LRR...    30   1.1  
At1g11900.1 68414.m01372 pentatricopeptide (PPR) repeat-containi...    29   2.5  
At5g08360.1 68418.m00985 expressed protein                             28   4.4  
At1g44414.1 68414.m05112 hypothetical protein                          28   5.8  
At1g19570.1 68414.m02437 dehydroascorbate reductase, putative si...    28   5.8  

>At1g79570.1 68414.m09276 protein kinase family protein low
           similarity to EDR1 [Arabidopsis thaliana] GI:11127925
          Length = 1248

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 28/69 (40%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = +1

Query: 115 NIVGRESGK--VRNSHQEFSLKIDDKLVTSHEDVANAFEKFFSDIPVSTTTSLNSSPTAA 288
           N   ++SGK  V  SH EF    DD    +H+DV   FEK    + VS  T L S P   
Sbjct: 671 NTAQQDSGKEAVGKSHDEFKTVNDDANHHTHKDVETIFEK----VGVSDET-LESEP--- 722

Query: 289 EILLHKHVN 315
              LHK VN
Sbjct: 723 ---LHKIVN 728


>At1g56520.1 68414.m06499 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 897

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 15/62 (24%), Positives = 38/62 (61%)
 Frame = +1

Query: 418 SVKILKSVIDIIAPHLVSIFNDCIRCGVFPDLMKHSKVIPFFKSGSTDDPSNYRPISVLP 597
           S++++ ++I++ +  +++I +DC R   FPD+    + +   K+G  + P+++R  + + 
Sbjct: 684 SLEVIPTLINLASLKIINI-HDCPRLKSFPDVPTSLEELVIEKTGVQELPASFRHCTGVT 742

Query: 598 TL 603
           TL
Sbjct: 743 TL 744


>At1g11900.1 68414.m01372 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 367

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = +1

Query: 472 IFNDCIRCGVFPDLMKHSKVI 534
           I+N+ ++CG+ PDL+ ++ VI
Sbjct: 270 IYNEMVQCGIEPDLLSYTAVI 290


>At5g08360.1 68418.m00985 expressed protein
          Length = 186

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +1

Query: 112 WNIVGRESGKVRNSHQEFSLKIDDKLVTSHEDVANAFEKFFSDIPVST 255
           WN+ G    ++ N H+E +     KL+ SH D      +   D+P S+
Sbjct: 129 WNMPGTSDQEIINRHEEAAASWLGKLMFSHNDFDLFMAEKPKDLPFSS 176


>At1g44414.1 68414.m05112 hypothetical protein
          Length = 101

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 484 CIRCGVFPDLMKHSKVIPFF 543
           CIRCG   DL+++ KVI  F
Sbjct: 24  CIRCGSQADLVEYDKVIKLF 43


>At1g19570.1 68414.m02437 dehydroascorbate reductase, putative
           similar to GB:BAA90672 from (Oryza sativa)
          Length = 213

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/35 (37%), Positives = 18/35 (51%)
 Frame = +1

Query: 169 LKIDDKLVTSHEDVANAFEKFFSDIPVSTTTSLNS 273
           LKIDDK VT  + +    E+ + D P+ T     S
Sbjct: 63  LKIDDKWVTDSDVIVGILEEKYPDPPLKTPAEFAS 97


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,948,792
Number of Sequences: 28952
Number of extensions: 221329
Number of successful extensions: 623
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 623
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)