Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0267
         (483 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q2UGG3 Cluster: ATP-dependent DNA helicase; n=3; Euroti...    37   0.21 
UniRef50_Q4VKA1 Cluster: O antigen polymerase; n=2; Escherichia ...    33   2.6  

>UniRef50_Q2UGG3 Cluster: ATP-dependent DNA helicase; n=3;
           Eurotiomycetidae|Rep: ATP-dependent DNA helicase -
           Aspergillus oryzae
          Length = 539

 Score = 37.1 bits (82), Expect = 0.21
 Identities = 16/42 (38%), Positives = 25/42 (59%)
 Frame = +1

Query: 67  YERSKRPPGNGATKESTTS*LANRTNIQRWFRNTLRHCESTN 192
           Y R+ + P NG +K+   S L N+    R F+  +R+CEST+
Sbjct: 410 YNRANKKPANGVSKDDPNSNLQNQYARLRSFQKVVRYCESTS 451


>UniRef50_Q4VKA1 Cluster: O antigen polymerase; n=2; Escherichia
           coli|Rep: O antigen polymerase - Escherichia coli
          Length = 395

 Score = 33.5 bits (73), Expect = 2.6
 Identities = 16/22 (72%), Positives = 21/22 (95%)
 Frame = +3

Query: 375 LFFFLYLGSLASALFSGAISIH 440
           LFFFL+L S+ASALFSGA++I+
Sbjct: 71  LFFFLFL-SVASALFSGAVTIY 91


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 462,843,250
Number of Sequences: 1657284
Number of extensions: 8785516
Number of successful extensions: 22383
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22383
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 27710252790
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)