Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0267
         (483 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyce...    25   4.5  
SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces pomb...    25   4.5  
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c...    25   6.0  

>SPAC637.13c |||cytoskeletal signaling protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 498

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +1

Query: 130 ANRTNIQRWFRNTLRHCESTNHIDLLSQLN 219
           +N T + RW+     H  + N+I  LS  N
Sbjct: 388 SNNTELMRWWEALNTHIANVNYIQPLSNAN 417


>SPAC22H12.03 |||mitochondrial hydrolase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = -2

Query: 476 FLFTNIKRDSNNMN 435
           FL +N+K+DSNN N
Sbjct: 168 FLLSNLKKDSNNSN 181


>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1315

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 172 RHCESTNHIDLLSQLNRHCCKLF 240
           RH +S  +ID++SQL R  C  F
Sbjct: 790 RHLQSGGNIDMVSQLLRKKCGSF 812


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,965,094
Number of Sequences: 5004
Number of extensions: 39566
Number of successful extensions: 108
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)