Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0267
         (483 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0931 - 33139383-33139580,33139748-33139870,33142520-331428...    29   2.0  

>01_06_0931 -
           33139383-33139580,33139748-33139870,33142520-33142891,
           33143380-33143450,33143769-33143810,33143895-33143967,
           33144518-33144679,33144778-33144878,33144992-33145114,
           33145296-33145689
          Length = 552

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 3/72 (4%)
 Frame = -2

Query: 260 HCAIEIRNNLQQCLLSWLNKSIWFVDSQWRSVFRNHLCILVRLANHEVVDSLVAP---FP 90
           +C +E +  + + L S+   S+ F  S+WRS+    + I +          + AP   F 
Sbjct: 389 NCTVECQEQIGKSLCSYQGPSVEFQGSEWRSLDGPFVSIWINNVQWAAESIMAAPGAKFS 448

Query: 89  GGRLERSYFRRC 54
            G ++    R C
Sbjct: 449 DGYMDAVIVRDC 460


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,109,983
Number of Sequences: 37544
Number of extensions: 229729
Number of successful extensions: 472
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 463
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 472
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)