Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0267
         (483 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.1  
SB_51912| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.1  
SB_35839| Best HMM Match : NOA36 (HMM E-Value=2.6)                     27   8.1  
SB_55028| Best HMM Match : Dynamitin (HMM E-Value=0.66)                27   8.1  

>SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3176

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 4    PHRDAGLEVLKGLTDSVHR 60
            PHRD   +V+KG+ +S HR
Sbjct: 1616 PHRDQRRDVIKGIRESEHR 1634


>SB_51912| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +1

Query: 49  SVHRLKYERSKRPPGNGATKEST 117
           +VHR K+ + K PPG GA +  T
Sbjct: 129 NVHRPKFAKPKGPPGRGARRMVT 151


>SB_35839| Best HMM Match : NOA36 (HMM E-Value=2.6)
          Length = 437

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/35 (31%), Positives = 22/35 (62%), Gaps = 2/35 (5%)
 Frame = -2

Query: 212 WLNKSIWFV--DSQWRSVFRNHLCILVRLANHEVV 114
           WL +++W +  +S+ R  FRN +C++  +A+   V
Sbjct: 208 WLQQNLWDLLSESRRRYPFRNKVCVVSYIADRSTV 242


>SB_55028| Best HMM Match : Dynamitin (HMM E-Value=0.66)
          Length = 1709

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +1

Query: 142  NIQRWFRNTLRHCESTNHIDLLSQL 216
            N Q W  N  RH     H+D L+QL
Sbjct: 1281 NAQEWEANASRHVSIKAHLDALTQL 1305


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,469,920
Number of Sequences: 59808
Number of extensions: 273899
Number of successful extensions: 635
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1013948003
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)