Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0267
         (483 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF098986-2|AAC67423.1|  410|Caenorhabditis elegans Hypothetical ...    28   3.1  
U70851-7|AAB09130.3|  640|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>AF098986-2|AAC67423.1|  410|Caenorhabditis elegans Hypothetical
           protein C36C9.3 protein.
          Length = 410

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 16/67 (23%), Positives = 30/67 (44%)
 Frame = +1

Query: 166 TLRHCESTNHIDLLSQLNRHCCKLFRISIAQ*KRANFEVIDLIQHSSVDETHALLHCIIT 345
           TL HCE  + +D      R   + F + +      +F++ D++     +E    L  +I 
Sbjct: 274 TLEHCEHLSSMDQWKMAERFFGRGFSLDVPIGSFFHFKLFDVVLREFTEEDAVKLRDMID 333

Query: 346 YSSKYIN 366
            SS +I+
Sbjct: 334 ESSDFIS 340


>U70851-7|AAB09130.3|  640|Caenorhabditis elegans Hypothetical
           protein M02B7.5 protein.
          Length = 640

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -2

Query: 146 ILVRLANHEVVDSLVAPFPGGRLERSYFRRCTLSVRPLRTSK 21
           +LV L N  ++DSL++P  G R   +   RC  +   L +++
Sbjct: 130 VLVNLQNSNMIDSLMSPRLGNRRFGAAASRCAPAAAELTSTE 171


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,803,927
Number of Sequences: 27780
Number of extensions: 216842
Number of successful extensions: 570
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 570
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)