Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0267
         (483 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g01340.1 68414.m00049 cyclic nucleotide-regulated ion channel...    29   1.6  
At4g32870.1 68417.m04678 expressed protein hypothetical protein ...    28   2.9  
At3g59140.1 68416.m06593 ABC transporter family protein putative...    28   2.9  
At2g40300.1 68415.m04964 ferritin, putative similar to ferritin ...    27   6.6  
At1g50710.1 68414.m05702 expressed protein                             27   6.6  
At3g53000.1 68416.m05842 F-box family protein / SKP1 interacting...    27   8.8  

>At1g01340.1 68414.m00049 cyclic nucleotide-regulated ion channel
           (CNGC10) (ACBK1) almost identical to CaM-regulated
           potassium ion channel (ACBK1) GI:8515883 from
           [Arabidopsis thaliana]; contains Pfam domain, PF00520:
           Ion transport protein
          Length = 706

 Score = 29.1 bits (62), Expect = 1.6
 Identities = 13/53 (24%), Positives = 27/53 (50%)
 Frame = -2

Query: 293 IRSITSKFARFHCAIEIRNNLQQCLLSWLNKSIWFVDSQWRSVFRNHLCILVR 135
           ++S+ S+F R H   ++++  +   + W   S+ F+ + WR   R  L   +R
Sbjct: 577 LKSVASQFRRLHSK-QLQHTFRFYSVQWRTWSVSFIQAAWRRYCRRKLAKSLR 628


>At4g32870.1 68417.m04678 expressed protein hypothetical protein
           F17H15.20 Arabidopsis thaliana chromosome II BAC F17H15,
           PID:g3643606
          Length = 157

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 17/55 (30%), Positives = 25/55 (45%)
 Frame = +1

Query: 64  KYERSKRPPGNGATKESTTS*LANRTNIQRWFRNTLRHCESTNHIDLLSQLNRHC 228
           K+E  K    NG T E   S  ++  N+Q WF  ++  C      D +  L R+C
Sbjct: 9   KWEGKKVAQVNGVTAEKVWSVFSDFCNVQEWF-PSVDTCYRVQGTDGVPGLIRYC 62


>At3g59140.1 68416.m06593 ABC transporter family protein putative
            multi resistance protein mrp - Arabidopsis thaliana,
            EMBL:ATMRPPROT
          Length = 1453

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 214  VGLTNQYGLSIHSGVVYFGTISVYWFDWLI 125
            +G+   YGLS++ G+VY      Y  +W+I
Sbjct: 1144 IGMALSYGLSLNMGLVYSVQNQCYLANWII 1173


>At2g40300.1 68415.m04964 ferritin, putative similar to ferritin
           subunit cowpea2 precursor [Vigna unguiculata]
           GI:2970654; contains Pfam profile PF00210: Ferritin-like
           domain
          Length = 259

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = -3

Query: 280 PQNSHVFIARSKYETTCNSVY*VGLTNQYGLS--IHSGVVYF 161
           P +SH+ +AR KY   C +     +  +Y +S   H+   YF
Sbjct: 81  PTSSHLSLARQKYSDECEAAINEQINVEYNVSYVYHAMYAYF 122


>At1g50710.1 68414.m05702 expressed protein
          Length = 423

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +2

Query: 140 PIYRDGSEIHYATVNRQTILIC*ANSIDTVASCFVFRSRNENV 268
           P+  DG EIH   + + +IL    +S+D+ ++ F   S + +V
Sbjct: 124 PLISDGGEIHEEEIEKWSILS--RSSLDSASTSFTISSTSNSV 164


>At3g53000.1 68416.m05842 F-box family protein / SKP1 interacting
           partner 3-related low similarity to SKP1 interacting
           partner 3 [Arabidopsis thaliana] GI:10716951; contains
           Pfam profile PF00646: F-box domain
          Length = 300

 Score = 26.6 bits (56), Expect = 8.8
 Identities = 8/32 (25%), Positives = 19/32 (59%)
 Frame = -3

Query: 145 YWFDWLIMKWLIP*SRHSLEVAWNVRTSDDVH 50
           YW ++ + ++++  S  S E+ W+++  D  H
Sbjct: 239 YWIEYRVGEFIVNGSEPSTEIQWSMKQIDCTH 270


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,998,819
Number of Sequences: 28952
Number of extensions: 194656
Number of successful extensions: 489
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 829097472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)