Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0266
         (558 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    29   0.61 
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha...    27   2.5  
SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyc...    26   4.3  
SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomy...    25   5.7  
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po...    25   5.7  
SPBC21C3.18 |spo4||serine/threonine protein kinase Spo4|Schizosa...    25   7.5  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    25   7.5  
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5...    25   7.5  
SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces pomb...    25   10.0 

>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 28.7 bits (61), Expect = 0.61
 Identities = 26/96 (27%), Positives = 42/96 (43%), Gaps = 1/96 (1%)
 Frame = +1

Query: 274 YPVWGVPLDFKSKKYPLVVDEY-EPDTFDVLKHRINQRFTNGGNKLVNINLSDSDQLLSY 450
           YP+   P +  S      V E+ + ++FD      ++ F    N  +N   S  + LLSY
Sbjct: 346 YPLNSSPFNTLSDVPQFDVSEFVDENSFDSSSSCSSKVFLTTRNNSINSEDSAHEVLLSY 405

Query: 451 SNVLGDLDIPKVKKQSLQHLKSSVEEDFQFLSELAA 558
           + VLG      ++   L  +K   + D Q  SEL +
Sbjct: 406 NRVLGS----DIQGTILDRVKKGYQFDSQKNSELVS 437


>SPAPJ696.02 |||actin cortical patch component Lsb4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = -3

Query: 250 TASGVLNGSVINNPFHSEFSSTERPKRSRKY 158
           TA G L  S ++N   S+++ T  P+RSR Y
Sbjct: 296 TAGGSLRSSKMDNR-RSKYADTPSPRRSRSY 325


>SPAC343.09 |ubx3|mug39|UBX domain protein Ubx3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 410

 Score = 25.8 bits (54), Expect = 4.3
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 322 LVVDEYEPDTFDVLKHRINQRFTNGGNKLVNINLS 426
           L +DE +P T      RI  R +NGG  ++ +NLS
Sbjct: 330 LQIDENKPTT------RIQVRLSNGGRTVLTVNLS 358


>SPAC20G8.03 |itr2||MFS myo-inositol transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 557

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = +2

Query: 17  ATMVSVWVFLISSIIGISGV 76
           A  +S W++++S++ GISG+
Sbjct: 74  AEKISSWIWVLSAVAGISGL 93


>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 851

 Score = 25.4 bits (53), Expect = 5.7
 Identities = 16/59 (27%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = +1

Query: 286 GVPLDFKSKKY-PLVVDEYEPDTFDVLKHRINQRFTNGGNKLVNINLSDSDQLLSYSNV 459
           GVP+  +  +Y P+   E E   FDV+   +N +  N   KL     ++  +   Y+N+
Sbjct: 423 GVPVILEKMQYFPIPRLEIEQPDFDVVLENLNLQTANVLPKLAEFRNNNFVRFSPYANI 481


>SPBC21C3.18 |spo4||serine/threonine protein kinase
           Spo4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = -3

Query: 349 YQVHTHLQLKDTFWI*NPAELPRLDMPLM*TSTTASGVL-NGSVINNPFHSEFSST 185
           YQV   + L D     +P++  +    L      A GV  +G    NPF S+F ST
Sbjct: 371 YQVALAIDLLDKLLELHPSKRVKAKTALQHEFFNACGVTRSGFEAENPFRSDFPST 426


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 122 GSSKTFESLLKEIFSASLGPF 184
           GSS+ F ++LK  FS+ L PF
Sbjct: 24  GSSRPFFTVLKRAFSSVLHPF 44


>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
           Taf72|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 643

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 11/39 (28%), Positives = 22/39 (56%)
 Frame = +1

Query: 301 FKSKKYPLVVDEYEPDTFDVLKHRINQRFTNGGNKLVNI 417
           ++  KY L    +   TFD+L H + +  +NGG+ ++ +
Sbjct: 143 YRQNKYQL---HFSRITFDLLLHFLFENVSNGGSIIIKL 178


>SPBPB2B2.12c |||UDP-glucose 4-epimerase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -2

Query: 341 SYSSTTKGYFLDLKSSGTPQTGYATNVNFDNCF 243
           S +S   G  ++ ++  T  T    N++FDNCF
Sbjct: 561 SETSLPTGDIVEWQNDITKPTKLDPNISFDNCF 593


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,241,027
Number of Sequences: 5004
Number of extensions: 45044
Number of successful extensions: 153
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 233995432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)