Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0266
(558 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0378 + 17446311-17446514,17446814-17446927,17447124-174472... 31 0.62
04_04_1547 - 34306836-34308713,34308938-34309048,34310056-34310202 29 2.5
08_02_0481 + 17636359-17636593,17638136-17638278,17638431-176385... 29 3.3
07_03_0961 - 22921761-22921850,22922204-22922338,22922409-229225... 29 3.3
10_08_1045 - 22535516-22535593,22535681-22535756,22535843-225359... 28 4.4
12_01_0673 - 5745956-5750346,5750788-5750872,5751018-5751082,575... 28 5.8
06_02_0038 + 10865068-10865150,10865249-10865335,10865835-108659... 27 7.7
04_04_1704 - 35481041-35481461,35481682-35481810,35482291-354823... 27 7.7
>07_03_0378 +
17446311-17446514,17446814-17446927,17447124-17447242,
17447595-17447641,17447720-17447820,17450769-17450840,
17451290-17451403,17451495-17451500,17451501-17451611
Length = 295
Score = 31.1 bits (67), Expect = 0.62
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = -1
Query: 168 AENISFKRLSKVLLEPEKLNDSGLWRMLSSQTPLIPIIEEIKKTHTDTIVAASC 7
A N +F L LLE KL+ GLW+ P + ++++ KT ++ +A C
Sbjct: 105 APNHTFPSLRCFLLESFKLHQKGLWKSECICDPEVTSVKDLSKTTDWSMGSALC 158
>04_04_1547 - 34306836-34308713,34308938-34309048,34310056-34310202
Length = 711
Score = 29.1 bits (62), Expect = 2.5
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = +1
Query: 298 DFKSKKYPLVVDEYEPDTFDVLKHRINQRFTNG 396
DF YP+ EY P FDV H +RF NG
Sbjct: 311 DFGGDMYPVEDYEYAPADFDVRAHHERERF-NG 342
>08_02_0481 +
17636359-17636593,17638136-17638278,17638431-17638550,
17638916-17639116
Length = 232
Score = 28.7 bits (61), Expect = 3.3
Identities = 17/37 (45%), Positives = 22/37 (59%)
Frame = +1
Query: 250 LSKFTLVAYPVWGVPLDFKSKKYPLVVDEYEPDTFDV 360
LSK LV P+ G+ D ++ K L VDE + D FDV
Sbjct: 124 LSKHLLVVVPIVGILSDIEAFKPVLNVDEVD-DIFDV 159
>07_03_0961 -
22921761-22921850,22922204-22922338,22922409-22922531,
22922621-22922707,22922780-22922831,22922939-22923063,
22923724-22923932,22924206-22924407,22924526-22924630,
22925353-22925414,22925755-22925944,22926017-22926112,
22926203-22926305,22927019-22927122,22927264-22927395,
22928257-22928343,22929121-22929206,22929291-22929383,
22932197-22932284,22932402-22932514,22932621-22932743,
22934153-22934204,22934365-22934408,22934498-22934571,
22934655-22934746,22935594-22935661,22937146-22937221,
22937323-22937679
Length = 1055
Score = 28.7 bits (61), Expect = 3.3
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = -1
Query: 207 SIRSSLQRKGPREAENISFKRLSKVLLEPEKLNDSGLWRML 85
+I S++QR GP E+E + K++ L + S LWR+L
Sbjct: 445 NISSNMQRDGPGESEQVGGKKVGAFLKNVTTVL-SDLWRIL 484
>10_08_1045 -
22535516-22535593,22535681-22535756,22535843-22535946,
22536048-22536176,22536539-22536700,22537029-22537259,
22537345-22537428,22537515-22537583,22537671-22537739,
22537827-22537889,22537913-22538052,22538527-22539097
Length = 591
Score = 28.3 bits (60), Expect = 4.4
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = -1
Query: 222 LSIIHSIRSSLQRKGPREAENISFKRLSKVLLEPEKLNDSGLW 94
L++IH+ R +Q + K L KVLLEPE+ + + W
Sbjct: 477 LAVIHAKRRIIQVLDSMANSSTQRKELRKVLLEPEEKHIATQW 519
>12_01_0673 -
5745956-5750346,5750788-5750872,5751018-5751082,
5751816-5751993
Length = 1572
Score = 27.9 bits (59), Expect = 5.8
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +1
Query: 466 DLDIPKVKKQSLQHLKSSVEEDFQFLS 546
D+DI KV K S QHL + ++ F+F S
Sbjct: 551 DIDIMKVLKLSYQHLPTELQICFRFCS 577
>06_02_0038 +
10865068-10865150,10865249-10865335,10865835-10865936,
10867000-10870078
Length = 1116
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/43 (30%), Positives = 18/43 (41%)
Frame = -2
Query: 479 GISKSPNTFEYDKS*SESLKLIFTSLLPPLVKR*LILCFNTSK 351
G+SK PN Y S S K + P + I C+N +
Sbjct: 93 GVSKDPNPCSYSSSSPSSCKPSVVKFISPSARLQAIQCYNLQR 135
>04_04_1704 - 35481041-35481461,35481682-35481810,35482291-35482397,
35482515-35482583,35482825-35482936,35483013-35483131,
35483211-35483291,35483629-35483700,35484039-35484239,
35484442-35484528,35485284-35485523,35485991-35486455,
35487434-35487556,35487643-35487769,35487851-35487919,
35488061-35488189,35488628-35488722,35488808-35488876,
35489332-35489443,35489545-35489663,35489753-35489833,
35490898-35490969,35491052-35491267,35491524-35491601,
35491694-35491831,35492403-35492414,35492639-35492872,
35493076-35493130,35493222-35493352,35493813-35494546,
35494613-35494820
Length = 1634
Score = 27.5 bits (58), Expect = 7.7
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = -1
Query: 261 KLRQLLQEC*TDQLSIIHSIRSSLQRKGPREAENI 157
K+R+ + E ++L++I S L+RKGP EA +
Sbjct: 905 KIRRQINEL-DEKLTVIESSPEPLERKGPTEARTL 938
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,214,851
Number of Sequences: 37544
Number of extensions: 244945
Number of successful extensions: 635
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 635
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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