Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0266
         (558 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13793| Best HMM Match : Helicase_C (HMM E-Value=5.6)                29   2.6  
SB_49600| Best HMM Match : RVT_1 (HMM E-Value=0)                       29   3.4  
SB_35308| Best HMM Match : VWA (HMM E-Value=1.1e-20)                   29   3.4  
SB_50497| Best HMM Match : CH (HMM E-Value=0.0084)                     28   4.5  
SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  

>SB_13793| Best HMM Match : Helicase_C (HMM E-Value=5.6)
          Length = 146

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 18/51 (35%), Positives = 29/51 (56%)
 Frame = +1

Query: 361 LKHRINQRFTNGGNKLVNINLSDSDQLLSYSNVLGDLDIPKVKKQSLQHLK 513
           L+HR+   FT  G+  VNIN+SD + +    +VLG+  I + +   L  L+
Sbjct: 53  LRHRMGF-FTKSGD--VNINVSDVNNIAFSRSVLGNPTISRARGYQLHQLE 100


>SB_49600| Best HMM Match : RVT_1 (HMM E-Value=0)
          Length = 1273

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/54 (29%), Positives = 28/54 (51%)
 Frame = +1

Query: 301  FKSKKYPLVVDEYEPDTFDVLKHRINQRFTNGGNKLVNINLSDSDQLLSYSNVL 462
            FKS K P ++DE +    D+LK   + +F    +  +N    DSD++ +   +L
Sbjct: 1017 FKSTKNPPLIDELKDFEDDMLKMIQSVKFIEASSPFLNKLKEDSDRIKNKPKLL 1070


>SB_35308| Best HMM Match : VWA (HMM E-Value=1.1e-20)
          Length = 381

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 18/64 (28%), Positives = 34/64 (53%), Gaps = 2/64 (3%)
 Frame = +2

Query: 32  VW-VFLISSIIGISGVCELS-ILHSPESLSFSGSSKTFESLLKEIFSASLGPFR*RELRM 205
           +W  +LI+ + GISG C+L+ +L +  S+    + +   + +K +F A  G      LR 
Sbjct: 95  LWCAYLITKLFGISGKCDLAFMLDASSSIQGETNFQLCITFVKSVFMAFSGSGFGTSLRF 154

Query: 206 EWII 217
            ++I
Sbjct: 155 GFVI 158


>SB_50497| Best HMM Match : CH (HMM E-Value=0.0084)
          Length = 2086

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 13/36 (36%), Positives = 23/36 (63%)
 Frame = -1

Query: 207 SIRSSLQRKGPREAENISFKRLSKVLLEPEKLNDSG 100
           ++RSS++++  +   N+S K   K  LEP+ L D+G
Sbjct: 46  NVRSSMRKEKAQSTINLSTKEDFKDKLEPKDLKDTG 81


>SB_50216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3293

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +1

Query: 379  QRFTNGGNKLVNINLSDSDQLLSYSNVLGDLDI-PKVKKQSLQHLKSSVE 525
            QRFT   NK+V + LS + ++  Y   L +LD+  +  +Q    L+  +E
Sbjct: 2053 QRFTGELNKIVLLLLSLTQRMHRYEKTLSELDMSEEADRQQRDILQEKIE 2102


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,649,211
Number of Sequences: 59808
Number of extensions: 295902
Number of successful extensions: 792
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 792
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1300738331
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)