Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0265
         (414 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P46755 Cluster: Mitochondrial ribosomal protein S4; n=1...    32   4.0  
UniRef50_O96204 Cluster: Putative uncharacterized protein PFB055...    32   5.3  
UniRef50_P0ACK1 Cluster: Catabolite gene activator; n=101; Gamma...    31   7.1  

>UniRef50_P46755 Cluster: Mitochondrial ribosomal protein S4; n=1;
           Acanthamoeba castellanii|Rep: Mitochondrial ribosomal
           protein S4 - Acanthamoeba castellanii (Amoeba)
          Length = 374

 Score = 32.3 bits (70), Expect = 4.0
 Identities = 20/59 (33%), Positives = 30/59 (50%)
 Frame = +1

Query: 181 KRFSI*RVKIFYVTQKQNRNAVMNHVFLRSLSFIEKTLHHNYCGSYFTFIYTCSLTLLF 357
           KRF   R K+F+ T K       N  +  +++F +  + HNYC S  + IYT +  L F
Sbjct: 98  KRFKTKR-KVFFKTSKIASLLKFNIFYANTVAFNKVFIKHNYCLSSCSNIYTQTKLLYF 155


>UniRef50_O96204 Cluster: Putative uncharacterized protein PFB0555c;
            n=4; Plasmodium|Rep: Putative uncharacterized protein
            PFB0555c - Plasmodium falciparum (isolate 3D7)
          Length = 4091

 Score = 31.9 bits (69), Expect = 5.3
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 162  YSHFAVMYFNIIHNRPMFLQLFF*IIVIHSHGYK 61
            Y   ++ Y N ++N P+FL LF   + IH H +K
Sbjct: 3066 YLKKSIKYNNHLYNMPIFLSLFLRCVTIHLHYFK 3099


>UniRef50_P0ACK1 Cluster: Catabolite gene activator; n=101;
           Gammaproteobacteria|Rep: Catabolite gene activator -
           Shigella flexneri
          Length = 210

 Score = 31.5 bits (68), Expect = 7.1
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = +3

Query: 270 LIIYRENASPQLLWFVFHVHIYMFPDTSVLV 362
           +++ +    P L WF+ H HI+ +P  S L+
Sbjct: 1   MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLI 31


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 379,132,663
Number of Sequences: 1657284
Number of extensions: 6873532
Number of successful extensions: 12286
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12285
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 19042509735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)