Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0265
         (414 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1A4.06c |||mitochondrial matrix protein import protein|Schiz...    27   1.2  
SPBC119.06 |sco1||copper chaperone Sco1|Schizosaccharomyces pomb...    24   8.1  

>SPBC1A4.06c |||mitochondrial matrix protein import
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 27.1 bits (57), Expect = 1.2
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = +2

Query: 131 MLKYITAKWLYRHSYS 178
           +L+Y T +W+ RHSYS
Sbjct: 13  ILRYSTKRWMNRHSYS 28


>SPBC119.06 |sco1||copper chaperone Sco1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 263

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +3

Query: 9   FYPSFNPITGIYAIVKQLCIHDYVLL*SKKIIAKTLDDYVL 131
           F P    +TG Y  +K +C    V   + K I    DDY++
Sbjct: 180 FNPKIVGLTGSYEEIKDICKKFRVYFSTPKNIDPKKDDYLV 220


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,714,146
Number of Sequences: 5004
Number of extensions: 33139
Number of successful extensions: 65
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)