Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0265
         (414 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0422 - 17796916-17797167,17797328-17797453,17797546-177977...    27   7.8  
04_01_0162 + 1845295-1846317,1846430-1846565,1848436-1848626,184...    27   7.8  

>10_08_0422 -
           17796916-17797167,17797328-17797453,17797546-17797700,
           17797793-17797907,17798022-17798118,17798274-17798368,
           17798500-17798585,17798689-17798819,17798909-17799090
          Length = 412

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
 Frame = -3

Query: 301 CG--EAFSR*MIRIVKKRDSLLHFDSAFESHK 212
           CG  EAF+  +  I+ + D +L FD AFE+++
Sbjct: 92  CGQSEAFAAAIFAIIDQGDEVLLFDPAFETYQ 123


>04_01_0162 + 1845295-1846317,1846430-1846565,1848436-1848626,
            1848780-1848887,1849001-1849204,1849294-1849525,
            1849602-1849751,1849830-1850007,1850416-1850519,
            1850611-1850933,1851274-1851459,1851672-1851899
          Length = 1020

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +3

Query: 261  FTILIIYRENASPQLLWFVFHVHIYMFPDTSVLVKSICLFIISQNFLKI 407
            FT L+       P+L+  +  V +  FPD S +    C    S+NF+KI
Sbjct: 914  FTFLVWLGRMLPPELVNNILGVSLANFPDLSKVQLRECDNEYSRNFMKI 962


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,382,439
Number of Sequences: 37544
Number of extensions: 158828
Number of successful extensions: 221
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 221
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)