Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0265
         (414 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10896| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.5  
SB_52270| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.1  
SB_26556| Best HMM Match : DUF1378 (HMM E-Value=9.5)                   27   6.1  
SB_10971| Best HMM Match : DUF1378 (HMM E-Value=3.4)                   27   6.1  
SB_55284| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.1  
SB_2398| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.1  
SB_34427| Best HMM Match : DUF1378 (HMM E-Value=6.2)                   27   8.1  

>SB_10896| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 342

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 15/43 (34%), Positives = 23/43 (53%)
 Frame = +1

Query: 178 LKRFSI*RVKIFYVTQKQNRNAVMNHVFLRSLSFIEKTLHHNY 306
           LK  ++ RV + Y  Q  + N +M+HV  R LS   +  H N+
Sbjct: 296 LKMLTLIRVPLSYRYQLVDVNTIMSHVHTRYLSRFTQKSHDNF 338


>SB_52270| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 88

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +3

Query: 318 FHVHIYMFPDTSVLVKSI--CLFIISQNFLKI 407
           F   I M  DT ++ +SI  CLF++  NFLKI
Sbjct: 33  FAYDIEMRMDTKLIHESIVCCLFLVRGNFLKI 64


>SB_26556| Best HMM Match : DUF1378 (HMM E-Value=9.5)
          Length = 116

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +3

Query: 318 FHVHIYMFPDTSVLVKSI--CLFIISQNFLKI 407
           F   I M  DT ++ +SI  CLF++  NFLKI
Sbjct: 53  FAYDIEMRMDTKLIHESIVCCLFLVRGNFLKI 84


>SB_10971| Best HMM Match : DUF1378 (HMM E-Value=3.4)
          Length = 228

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +3

Query: 318 FHVHIYMFPDTSVLVKSI--CLFIISQNFLKI 407
           F   I M  DT ++ +SI  CLF++  NFLKI
Sbjct: 53  FAYDIEMRMDTKLIHESIVCCLFLVRGNFLKI 84



 Score = 27.1 bits (57), Expect = 6.1
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +3

Query: 318 FHVHIYMFPDTSVLVKSI--CLFIISQNFLKI 407
           F   I M  DT ++ +SI  CLF++  NFLKI
Sbjct: 165 FAYDIEMRMDTKLIHESIVCCLFLVRGNFLKI 196


>SB_55284| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 207

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -1

Query: 372 ILISLKQKCQGTCIYEREIRTTII 301
           IL  L+Q CQ  C+++ EIR  +I
Sbjct: 131 ILFPLQQACQMKCMHKLEIRARVI 154


>SB_2398| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 108

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +3

Query: 318 FHVHIYMFPDTSVLVKSI--CLFIISQNFLKI 407
           F   I M  DT ++ +SI  CLF++  NFLKI
Sbjct: 53  FAYDIEMRLDTKLIHQSIVCCLFLVRGNFLKI 84


>SB_34427| Best HMM Match : DUF1378 (HMM E-Value=6.2)
          Length = 116

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +3

Query: 318 FHVHIYMFPDTSVLVKSI--CLFIISQNFLKI 407
           F   I M  DT ++ +SI  CLF++  NFLKI
Sbjct: 53  FAYDIEMRMDTKLVHESIVCCLFLVRGNFLKI 84


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,859,707
Number of Sequences: 59808
Number of extensions: 220479
Number of successful extensions: 363
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 345
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 764823134
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)