Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0265
         (414 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70210-8|CAA94154.2|  414|Caenorhabditis elegans Hypothetical pr...    27   4.1  
AY204169-1|AAO39173.1|  414|Caenorhabditis elegans nuclear recep...    27   4.1  
AL132952-11|CAB61148.1|  136|Caenorhabditis elegans Hypothetical...    27   5.4  
Z83233-12|CAB05769.2|  486|Caenorhabditis elegans Hypothetical p...    27   7.1  
Z83128-6|CAB05638.2|  353|Caenorhabditis elegans Hypothetical pr...    27   7.1  
AL021175-10|CAA15972.2|  486|Caenorhabditis elegans Hypothetical...    27   7.1  

>Z70210-8|CAA94154.2|  414|Caenorhabditis elegans Hypothetical
           protein K08H2.8 protein.
          Length = 414

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +1

Query: 214 YVTQKQNRNAVMNHVFLRSLSFIEKTLHHNYCGSYFTFIYTCSLTLLF 357
           ++ QK+ R A++       LS  E TL H      FT I+   + L+F
Sbjct: 168 FMEQKRRRRAMLCGSLEEILSEQEMTLRHPATSEDFTTIFQAQMVLMF 215


>AY204169-1|AAO39173.1|  414|Caenorhabditis elegans nuclear receptor
           NHR-32 protein.
          Length = 414

 Score = 27.5 bits (58), Expect = 4.1
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +1

Query: 214 YVTQKQNRNAVMNHVFLRSLSFIEKTLHHNYCGSYFTFIYTCSLTLLF 357
           ++ QK+ R A++       LS  E TL H      FT I+   + L+F
Sbjct: 168 FMEQKRRRRAMLCGSLEEILSEQEMTLRHPATSEDFTTIFQAQMVLMF 215


>AL132952-11|CAB61148.1|  136|Caenorhabditis elegans Hypothetical
           protein Y51H4A.16 protein.
          Length = 136

 Score = 27.1 bits (57), Expect = 5.4
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 128 IMLKYITAKWLYRHSYS*NVLVFSG 202
           I+L YI  + +Y+HS   NVL+F G
Sbjct: 109 ILLYYILIRVIYKHSNLENVLMFHG 133


>Z83233-12|CAB05769.2|  486|Caenorhabditis elegans Hypothetical
           protein K06B4.12 protein.
          Length = 486

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +1

Query: 202 VKIFYVTQKQNRNAVMNHVFLRSLSFIEKTLHHNYCGSY 318
           V+ +   Q++N+N VMN+  +RS++   K+    Y G +
Sbjct: 414 VEDYGAAQRENKNEVMNNFTVRSIATFMKSNTDIYGGGF 452


>Z83128-6|CAB05638.2|  353|Caenorhabditis elegans Hypothetical
           protein W01D2.4 protein.
          Length = 353

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 15/59 (25%), Positives = 31/59 (52%)
 Frame = +3

Query: 192 YLAGENILCDSKAESKCSNESRFFTILIIYRENASPQLLWFVFHVHIYMFPDTSVLVKS 368
           ++AG ++ C   A  +C+  ++ F +  ++R++  P + + +    IY F  T  LV S
Sbjct: 120 WMAG-SLACILLAIERCAEINQQFPLEFLFRKSVFPVVAFLLLSYTIYAFFFTKALVFS 177


>AL021175-10|CAA15972.2|  486|Caenorhabditis elegans Hypothetical
           protein K06B4.12 protein.
          Length = 486

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +1

Query: 202 VKIFYVTQKQNRNAVMNHVFLRSLSFIEKTLHHNYCGSY 318
           V+ +   Q++N+N VMN+  +RS++   K+    Y G +
Sbjct: 414 VEDYGAAQRENKNEVMNNFTVRSIATFMKSNTDIYGGGF 452


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,251,876
Number of Sequences: 27780
Number of extensions: 179712
Number of successful extensions: 382
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)