Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0265
         (414 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g55340.1 68418.m06896 long-chain-alcohol O-fatty-acyltransfer...    28   2.2  
At4g35380.1 68417.m05026 guanine nucleotide exchange family prot...    27   5.0  
At1g75120.1 68414.m08724 expressed protein                             27   6.6  
At5g61690.1 68418.m07740 ABC transporter family protein ABC tran...    26   8.7  

>At5g55340.1 68418.m06896 long-chain-alcohol O-fatty-acyltransferase
           family protein / wax synthase family protein contains
           similarity to wax synthase similarity to wax synthase
           wax synthase - Simmondsia chinensis, PID:g5020219
           similar to wax synthase [gi:5020219] from Simmondsia
           chinensis
          Length = 333

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +3

Query: 270 LIIYRENASPQLLWFVFHVHIYMFPDTSVLVKSICLFI 383
           L  YR+N SP +L  ++ VH+Y+  +  +    + +FI
Sbjct: 132 LYSYRQNLSPTILLGLYFVHLYLEIEIILTFVKVVVFI 169


>At4g35380.1 68417.m05026 guanine nucleotide exchange family protein
            similar to guanine nucleotide exchange factor [Homo
            sapiens] GI:5456754; contains Pfam profile PF01369: Sec7
            domain
          Length = 1706

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = +3

Query: 162  IDIVIAKTF*YLAGENILCDSKAESKCSNESRFFTILI--IYRENASPQLLWFVFHV 326
            ++   A+T   ++    LC  +AES   + S FF +L+  +  E+ SPQ+ + + +V
Sbjct: 1640 VEEATARTSLLVSSLEALCSLEAESLKKHVSSFFPLLVDLVRTEHCSPQVPYVLSNV 1696


>At1g75120.1 68414.m08724 expressed protein 
          Length = 402

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 11/38 (28%), Positives = 25/38 (65%)
 Frame = +3

Query: 3   YLFYPSFNPITGIYAIVKQLCIHDYVLL*SKKIIAKTL 116
           +LFYPS    TG+YA  + + +++++   + +++ KT+
Sbjct: 320 HLFYPSHPGYTGLYASKRVMDVYEFM---NSRVLFKTV 354


>At5g61690.1 68418.m07740 ABC transporter family protein ABC
           transport protein, Dictyostelium discoideum, PIR:T18288
          Length = 954

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 19/65 (29%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
 Frame = +3

Query: 192 YLAGENILCDSKAESKCSNESRFFTILIIYRENASPQLLWFVFHVHI-YMFPDTSVLVKS 368
           + AG  +L D+ +  K S  S      IIY+      L WFV  ++   + P+ S + K 
Sbjct: 382 FSAGLKLLLDATSTPKSSGISWSNRANIIYQWLLGTFLFWFVLAIYFDNIIPNASGVRKP 441

Query: 369 ICLFI 383
           I  F+
Sbjct: 442 IFYFL 446


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,279,123
Number of Sequences: 28952
Number of extensions: 148815
Number of successful extensions: 242
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 238
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 242
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 625471056
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)