Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0264
         (570 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb...    29   0.48 
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    26   3.4  
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei...    26   4.5  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    25   5.9  

>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
           membrane proteins, ESCRT 0 complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 610

 Score = 29.1 bits (62), Expect = 0.48
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 267 ICYSCYINRIVQGNCAAGFTSQRQLHAHTRRTAGRP 374
           +C SCY  R       +   ++R+ HA TR+T  +P
Sbjct: 221 VCDSCYSLRTKPKGSKSRARNERKFHAKTRKTPSKP 256


>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +1

Query: 73  KNKYQLINIK*IEEKQITERFEKNV 147
           +NK +L+ +   +  +ITE+FEKN+
Sbjct: 202 RNKAELVQLAYDDPYRITEKFEKNI 226


>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 945

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 12/37 (32%), Positives = 17/37 (45%)
 Frame = -2

Query: 551 YAEDGWKFVKIGENVFEVIKPCTRCVMTTVDPETGVR 441
           Y E+G  +  + +N F   KP T   + T  P  G R
Sbjct: 102 YIENGGLYAFVFDNTFSKTKPKTVTFLLTAQPYNGPR 138


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -2

Query: 536 WKFVKIGENVFEVIKPCTR 480
           WK+   G NVFE I P  R
Sbjct: 151 WKYESPGNNVFEAISPHER 169


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,822,723
Number of Sequences: 5004
Number of extensions: 31344
Number of successful extensions: 86
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)