Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0264
         (570 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20705| Best HMM Match : No HMM Matches (HMM E-Value=.)              56   2e-08
SB_45434| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.5  
SB_40339| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.2  
SB_57482| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)             27   8.2  

>SB_20705| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 976

 Score = 56.0 bits (129), Expect = 2e-08
 Identities = 26/57 (45%), Positives = 35/57 (61%)
 Frame = -2

Query: 569 VEGAEPYAEDGWKFVKIGENVFEVIKPCTRCVMTTVDPETGVRNSASEPLNTLKKYR 399
           + G +P+ ED W+F+KIG+  FE    CTRC M   D ETG   + +EPL TL + R
Sbjct: 723 ISGEKPFDEDSWQFMKIGQEHFEFQSVCTRCRMVGNDQETG--RTMTEPLKTLGRLR 777


>SB_45434| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 156

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 3/32 (9%)
 Frame = +3

Query: 474 HASRARL---YNFEHVFADLHEFPSVFSVRLS 560
           H S +R+   YN++HV  D HE  ++ S R+S
Sbjct: 2   HTSTSRVPKPYNYKHVLLDRHEHVTICSYRIS 33


>SB_40339| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 251

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = -2

Query: 515 ENVFEVIKPCTRCVMTTVDPETGVR 441
           E V E+IK CT  V+ TV P T  R
Sbjct: 11  EEVSEIIKSCTDRVICTVKPSTDFR 35


>SB_57482| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
          Length = 789

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 15/40 (37%), Positives = 23/40 (57%)
 Frame = -3

Query: 460 IQKLAFAILLLNH*IH*KNIVK*RTKKSAGRPAVLRVWAC 341
           ++ L   +LLL+  I  KN  K ++KK A +PA L+   C
Sbjct: 1   MRALLLCLLLLSTPILGKNKAKVKSKKKADKPAPLKYLGC 40


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,304,081
Number of Sequences: 59808
Number of extensions: 213739
Number of successful extensions: 518
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 499
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)