Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0264
         (570 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    26   0.23 
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   4.9  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    21   8.6  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   8.6  

>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +3

Query: 309 CAAGFTSQRQLHAHTRRTAG 368
           C  GFT  +QL  HTR   G
Sbjct: 209 CGKGFTCSKQLKVHTRTHTG 228


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 10/30 (33%), Positives = 15/30 (50%)
 Frame = +2

Query: 308 LCRRVYFAAPVARPYAENCRTTCALLRSLF 397
           +C   +F   + RP+ +N     A L SLF
Sbjct: 383 VCWLPFFVLALVRPFLKNPDAIPAFLSSLF 412


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -2

Query: 140 FSNLSVICFSSIYFIL 93
           F N S+ CF+ ++FI+
Sbjct: 2   FLNGSLYCFARLFFII 17


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 6/24 (25%), Positives = 14/24 (58%)
 Frame = -2

Query: 557 EPYAEDGWKFVKIGENVFEVIKPC 486
           +PY +D +    +GE + +++  C
Sbjct: 440 QPYTKDSYTVAGMGETIEDLLHFC 463


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 125,468
Number of Sequences: 438
Number of extensions: 2638
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)