Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0263
(485 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1026 + 23743186-23743686,23743793-23743915,23744734-237448... 61 5e-10
08_02_0753 - 20805672-20805731,20805825-20805941,20806394-208065... 58 5e-09
04_04_0141 + 23079516-23079925,23080006-23080084,23080204-230803... 57 7e-09
02_04_0360 + 22353057-22353691,22354716-22355144,22355233-223553... 57 7e-09
03_05_0881 + 28461857-28462263,28462357-28462435,28462798-284629... 57 9e-09
11_06_0036 + 19474848-19475188,19475696-19475774,19475880-194760... 55 3e-08
01_01_0767 + 5931031-5931281,5931414-5931594,5932020-5932129,593... 52 2e-07
11_06_0360 - 22699524-22699529,22699865-22699899,22700650-227007... 41 6e-04
12_02_0330 - 17612867-17613161,17613376-17613459,17613554-176137... 29 2.6
01_05_0012 + 17147764-17148141,17148316-17148465,17149360-171497... 28 3.5
12_02_1014 - 25316682-25317236 28 4.6
>08_02_1026 +
23743186-23743686,23743793-23743915,23744734-23744850,
23744948-23745001
Length = 264
Score = 60.9 bits (141), Expect = 5e-10
Identities = 28/29 (96%), Positives = 28/29 (96%)
Frame = +1
Query: 94 TLXEESYKDSTLIMQLLRDNLTLWTSDMQ 180
TL EESYKDSTLIMQLLRDNLTLWTSDMQ
Sbjct: 219 TLGEESYKDSTLIMQLLRDNLTLWTSDMQ 247
>08_02_0753 -
20805672-20805731,20805825-20805941,20806394-20806516,
20806700-20806778,20806867-20807258
Length = 256
Score = 57.6 bits (133), Expect = 5e-09
Identities = 26/28 (92%), Positives = 27/28 (96%)
Frame = +1
Query: 94 TLXEESYKDSTLIMQLLRDNLTLWTSDM 177
TL EESYKDSTLIMQLLRDNLTLWTSD+
Sbjct: 209 TLGEESYKDSTLIMQLLRDNLTLWTSDL 236
>04_04_0141 +
23079516-23079925,23080006-23080084,23080204-23080326,
23081655-23081771,23081886-23081945
Length = 262
Score = 57.2 bits (132), Expect = 7e-09
Identities = 26/28 (92%), Positives = 27/28 (96%)
Frame = +1
Query: 94 TLXEESYKDSTLIMQLLRDNLTLWTSDM 177
TL EESYKDSTLIMQLLRDNLTLWTSD+
Sbjct: 215 TLSEESYKDSTLIMQLLRDNLTLWTSDI 242
>02_04_0360 +
22353057-22353691,22354716-22355144,22355233-22355311,
22355472-22355594,22356256-22356372,22356636-22356833
Length = 526
Score = 57.2 bits (132), Expect = 7e-09
Identities = 26/28 (92%), Positives = 27/28 (96%)
Frame = +1
Query: 94 TLXEESYKDSTLIMQLLRDNLTLWTSDM 177
TL EESYKDSTLIMQLLRDNLTLWTSD+
Sbjct: 433 TLSEESYKDSTLIMQLLRDNLTLWTSDI 460
>03_05_0881 +
28461857-28462263,28462357-28462435,28462798-28462920,
28463632-28463748,28463861-28463917
Length = 260
Score = 56.8 bits (131), Expect = 9e-09
Identities = 26/27 (96%), Positives = 26/27 (96%)
Frame = +1
Query: 94 TLXEESYKDSTLIMQLLRDNLTLWTSD 174
TL EESYKDSTLIMQLLRDNLTLWTSD
Sbjct: 214 TLGEESYKDSTLIMQLLRDNLTLWTSD 240
>11_06_0036 +
19474848-19475188,19475696-19475774,19475880-19476002,
19476970-19477086,19477169-19477228
Length = 239
Score = 55.2 bits (127), Expect = 3e-08
Identities = 25/27 (92%), Positives = 26/27 (96%)
Frame = +1
Query: 94 TLXEESYKDSTLIMQLLRDNLTLWTSD 174
+L EESYKDSTLIMQLLRDNLTLWTSD
Sbjct: 192 SLGEESYKDSTLIMQLLRDNLTLWTSD 218
>01_01_0767 +
5931031-5931281,5931414-5931594,5932020-5932129,
5932212-5932360,5932686-5932738,5933168-5933260
Length = 278
Score = 52.0 bits (119), Expect = 2e-07
Identities = 23/28 (82%), Positives = 25/28 (89%)
Frame = +1
Query: 94 TLXEESYKDSTLIMQLLRDNLTLWTSDM 177
+L EE+YKDSTLIMQLLRDNL LW SDM
Sbjct: 199 SLSEENYKDSTLIMQLLRDNLALWNSDM 226
>11_06_0360 -
22699524-22699529,22699865-22699899,22700650-22700792,
22701165-22701220,22701367-22701454,22702737-22703037,
22704365-22704428
Length = 230
Score = 40.7 bits (91), Expect = 6e-04
Identities = 16/24 (66%), Positives = 21/24 (87%)
Frame = +1
Query: 106 ESYKDSTLIMQLLRDNLTLWTSDM 177
E YKDS L+MQLL++NL LWTS++
Sbjct: 192 EGYKDSMLMMQLLKENLALWTSEL 215
>12_02_0330 -
17612867-17613161,17613376-17613459,17613554-17613744,
17614085-17614995,17615081-17615252,17615337-17615412,
17615515-17615634,17615841-17616005,17616096-17616186,
17616644-17616785,17616848-17617042,17617132-17617185,
17617299-17617397,17618181-17618296,17618376-17618442
Length = 925
Score = 28.7 bits (61), Expect = 2.6
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +1
Query: 301 KSQPAVPTRGPGTALSLFVFDYGKYIICNI-ILWYCILTVV 420
+S P V PG + LFVFD K+ +C + +L YC++ V
Sbjct: 864 RSTPFVDGACPGISCPLFVFD--KFWVCFVEVLSYCMICPV 902
>01_05_0012 +
17147764-17148141,17148316-17148465,17149360-17149729,
17149898-17150015,17150121-17150226,17150326-17150418,
17150498-17150593,17151169-17151891,17152012-17152160,
17153434-17153520,17153541-17153625
Length = 784
Score = 28.3 bits (60), Expect = 3.5
Identities = 20/79 (25%), Positives = 34/79 (43%)
Frame = -3
Query: 255 HYETSWSSPSCAGSFCSASADSPSPLHVGGPQREVVPQQLHDERGVLVALLXERVQFXXX 76
+Y TS SP + S S D PS + PQ ++ + + L+A+ ++ QF
Sbjct: 546 NYRTSIDSPKQSSS-AEKSQDIPSRPLMMTPQEKIEKLRRRQQMQALIAIQQQQQQFGQD 604
Query: 75 XXXXXXXEPEARSGLFRSP 19
P+A S ++P
Sbjct: 605 GSGSDTMVPQAYSPKSKNP 623
>12_02_1014 - 25316682-25317236
Length = 184
Score = 27.9 bits (59), Expect = 4.6
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -3
Query: 231 PSCAGSFCSASADSPSPLHVGGPQREVVPQQLHDERGVLVALL 103
P A + + D SPL P+R V P + H + +L LL
Sbjct: 6 PIAASAAVATGGDGKSPLFCPKPRRPVAPLRCHHDMDLLDLLL 48
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,796,907
Number of Sequences: 37544
Number of extensions: 164921
Number of successful extensions: 541
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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