Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0263
         (485 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36368| Best HMM Match : 14-3-3 (HMM E-Value=0)                      52   3e-07
SB_34219| Best HMM Match : No HMM Matches (HMM E-Value=.)              50   8e-07
SB_8780| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   6.2  

>SB_36368| Best HMM Match : 14-3-3 (HMM E-Value=0)
          Length = 248

 Score = 52.0 bits (119), Expect = 3e-07
 Identities = 23/26 (88%), Positives = 25/26 (96%)
 Frame = +1

Query: 97  LXEESYKDSTLIMQLLRDNLTLWTSD 174
           L +ESYKDSTLIMQLLRDNLTLWTS+
Sbjct: 214 LKDESYKDSTLIMQLLRDNLTLWTSE 239


>SB_34219| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 309

 Score = 50.4 bits (115), Expect = 8e-07
 Identities = 22/29 (75%), Positives = 26/29 (89%)
 Frame = +1

Query: 94  TLXEESYKDSTLIMQLLRDNLTLWTSDMQ 180
           +L E+ YKDSTLIMQLLRDNLTLW+S+ Q
Sbjct: 275 SLNEDQYKDSTLIMQLLRDNLTLWSSENQ 303



 Score = 42.7 bits (96), Expect = 2e-04
 Identities = 20/29 (68%), Positives = 23/29 (79%)
 Frame = +1

Query: 94  TLXEESYKDSTLIMQLLRDNLTLWTSDMQ 180
           TL E+ YKDSTLIMQLLRDNLT+    +Q
Sbjct: 186 TLSEDQYKDSTLIMQLLRDNLTVVEKALQ 214


>SB_8780| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 172

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -3

Query: 255 HYETSWSSPSCAGSFCSASADSPSPLHVGGPQREVVPQQ 139
           H  TSWSSPS    + + S  SPSP +        +PQQ
Sbjct: 109 HKTTSWSSPS--PKYKTTSWTSPSPQYKTTSWSSPLPQQ 145


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,843,531
Number of Sequences: 59808
Number of extensions: 168234
Number of successful extensions: 475
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)