Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0263
         (485 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z73910-2|CAA98138.1|  248|Caenorhabditis elegans Hypothetical pr...    56   1e-08
U05038-1|AAA61872.1|  248|Caenorhabditis elegans 14-3-3 protein ...    56   1e-08
Z66564-2|CAA91474.1|  248|Caenorhabditis elegans Hypothetical pr...    56   2e-08
AY204171-1|AAO39175.1|  424|Caenorhabditis elegans nuclear recep...    27   7.2  
AF022978-1|AAG24179.2|  424|Caenorhabditis elegans Nuclear hormo...    27   7.2  
Z54236-10|CAA90986.1|  407|Caenorhabditis elegans Hypothetical p...    27   9.5  
Z54235-12|CAA90977.1|  407|Caenorhabditis elegans Hypothetical p...    27   9.5  

>Z73910-2|CAA98138.1|  248|Caenorhabditis elegans Hypothetical
           protein M117.2 protein.
          Length = 248

 Score = 56.0 bits (129), Expect = 1e-08
 Identities = 25/28 (89%), Positives = 27/28 (96%)
 Frame = +1

Query: 94  TLXEESYKDSTLIMQLLRDNLTLWTSDM 177
           TL E+SYKDSTLIMQLLRDNLTLWTSD+
Sbjct: 206 TLNEDSYKDSTLIMQLLRDNLTLWTSDV 233


>U05038-1|AAA61872.1|  248|Caenorhabditis elegans 14-3-3 protein
           protein.
          Length = 248

 Score = 56.0 bits (129), Expect = 1e-08
 Identities = 25/28 (89%), Positives = 27/28 (96%)
 Frame = +1

Query: 94  TLXEESYKDSTLIMQLLRDNLTLWTSDM 177
           TL E+SYKDSTLIMQLLRDNLTLWTSD+
Sbjct: 206 TLNEDSYKDSTLIMQLLRDNLTLWTSDV 233


>Z66564-2|CAA91474.1|  248|Caenorhabditis elegans Hypothetical
           protein F52D10.3a protein.
          Length = 248

 Score = 55.6 bits (128), Expect = 2e-08
 Identities = 25/27 (92%), Positives = 26/27 (96%)
 Frame = +1

Query: 94  TLXEESYKDSTLIMQLLRDNLTLWTSD 174
           TL E+SYKDSTLIMQLLRDNLTLWTSD
Sbjct: 207 TLNEDSYKDSTLIMQLLRDNLTLWTSD 233


>AY204171-1|AAO39175.1|  424|Caenorhabditis elegans nuclear receptor
           NHR-55 protein.
          Length = 424

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -3

Query: 237 SSPSCAGSFCSASADSPSPLHVGGPQR-EVVPQQLH 133
           +SPS + SFCS+S+ SPS L +  P   +V  Q+ H
Sbjct: 2   NSPSSSSSFCSSSS-SPSSLVLYSPDTCQVCGQKSH 36


>AF022978-1|AAG24179.2|  424|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 55 protein.
          Length = 424

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 16/36 (44%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
 Frame = -3

Query: 237 SSPSCAGSFCSASADSPSPLHVGGPQR-EVVPQQLH 133
           +SPS + SFCS+S+ SPS L +  P   +V  Q+ H
Sbjct: 2   NSPSSSSSFCSSSS-SPSSLVLYSPDTCQVCGQKSH 36


>Z54236-10|CAA90986.1|  407|Caenorhabditis elegans Hypothetical
           protein C09G9.6 protein.
          Length = 407

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 189 PSPLHVGGPQREVVPQQLHDERGVL 115
           P+P+   GP+ E+  ++LHD  G +
Sbjct: 251 PTPVSTRGPRYELPTKELHDAEGAM 275


>Z54235-12|CAA90977.1|  407|Caenorhabditis elegans Hypothetical
           protein C09G9.6 protein.
          Length = 407

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -3

Query: 189 PSPLHVGGPQREVVPQQLHDERGVL 115
           P+P+   GP+ E+  ++LHD  G +
Sbjct: 251 PTPVSTRGPRYELPTKELHDAEGAM 275


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,941,008
Number of Sequences: 27780
Number of extensions: 129170
Number of successful extensions: 457
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 419
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)