Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0262
(595 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar... 38 8e-04
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 31 0.096
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 27 1.6
SPAC1565.07c |||TATA binding protein interacting protein |Schizo... 27 2.1
SPBC23G7.07c |||replication regulator |Schizosaccharomyces pombe... 27 2.1
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb... 27 2.7
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 26 4.8
SPCC1620.06c |||ribose-phosphate pyrophosphokinase |Schizosaccha... 25 6.3
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce... 25 6.3
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ... 25 8.3
>SPMIT.06 |||mitochondrial DNA binding
endonuclease|Schizosaccharomyces pombe|chr
mitochondrial|||Manual
Length = 807
Score = 38.3 bits (85), Expect = 8e-04
Identities = 24/64 (37%), Positives = 34/64 (53%)
Frame = -3
Query: 578 QIFISFIINLLSGRMLKVISEDSYQSRIVWKGLPQGSVLSPLLYNIYSHDLEASLRGKVN 399
Q FI I L+ L +E+ Y+ IV G PQGS++SP+L NIY H L+ + +
Sbjct: 394 QRFIQLIRKALNAGYL---TENRYKYDIV--GTPQGSIVSPILANIYLHQLDEFIENLKS 448
Query: 398 TLQY 387
Y
Sbjct: 449 EFDY 452
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 31.5 bits (68), Expect = 0.096
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = -3
Query: 548 LSGRMLKVISEDSYQSRIVWKGLPQGSVLSPLLYNIYSHDL 426
LSG ++K I Y ++ G+PQGS+LS L + Y DL
Sbjct: 686 LSGHIVK-IGNSQYLQKV---GIPQGSILSSFLCHFYMEDL 722
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 27.5 bits (58), Expect = 1.6
Identities = 18/55 (32%), Positives = 25/55 (45%)
Frame = -3
Query: 404 VNTLQYADDLLLYVSGDSIDNMSDTVTYSLKLLKVWLDNNSLSLSVPKSIIVLFS 240
+NTL Y + VS D + S TV L WL SLS + + + +L S
Sbjct: 337 INTLLYVNKEKSIVSYDLLRAQSTTVASVKHLGSAWLPPRSLSYNPAEKVALLTS 391
>SPAC1565.07c |||TATA binding protein interacting protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1220
Score = 27.1 bits (57), Expect = 2.1
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +3
Query: 543 REKIDYETYENLWDI 587
+ KIDYET + +WDI
Sbjct: 916 KSKIDYETADKIWDI 930
>SPBC23G7.07c |||replication regulator |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 277
Score = 27.1 bits (57), Expect = 2.1
Identities = 21/97 (21%), Positives = 45/97 (46%), Gaps = 4/97 (4%)
Frame = -3
Query: 467 VLSPLLYNIYSHDLEASLRGKVNTLQYADDLLLYVSGDSIDNMSDTVTYSLKLLKVWLDN 288
+L+ + +IYS + L KV Y +D + + ++DN + + + K + N
Sbjct: 91 LLNNYIKSIYSDLTDVELSDKVIKASYIEDTISFSKPKTVDNYPEYIQHLPGFTKKVVQN 150
Query: 287 NSLSLSVPKSIIVLFSRMR----LPPSVSVFYNNIRV 189
++ P+ +++ S +R L P+ S+ N +V
Sbjct: 151 SN-----PEILVLCISALRAIDVLKPTKSLQNKNFKV 182
>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 952
Score = 26.6 bits (56), Expect = 2.7
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = -3
Query: 203 NNIRVPVKSEATFLGVILDSRLTGSPHCYYISD-KCEKILNILR 75
N+ ++ VKSE D LT SP+ Y+ S + EK L + R
Sbjct: 43 NSFKLLVKSEGNNQSTTADVTLTKSPNAYHASSAREEKDLQVSR 86
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 25.8 bits (54), Expect = 4.8
Identities = 15/44 (34%), Positives = 27/44 (61%)
Frame = -3
Query: 389 YADDLLLYVSGDSIDNMSDTVTYSLKLLKVWLDNNSLSLSVPKS 258
++D L+VSG+ + N+S + T + L ++ + N LS S PK+
Sbjct: 853 FSDLKHLFVSGNELANLSISSTAQVLLETLYANGNRLS-SFPKN 895
>SPCC1620.06c |||ribose-phosphate pyrophosphokinase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 321
Score = 25.4 bits (53), Expect = 6.3
Identities = 16/64 (25%), Positives = 31/64 (48%)
Frame = -3
Query: 551 LLSGRMLKVISEDSYQSRIVWKGLPQGSVLSPLLYNIYSHDLEASLRGKVNTLQYADDLL 372
+LSG+ +KVI+E + + IV +P S L I + D+ L + + + + +
Sbjct: 255 ILSGKAIKVINESALEKVIVTNTIPHDDKRS-LCSKIETIDISGVLAECIRRIHHGESVS 313
Query: 371 LYVS 360
+ S
Sbjct: 314 VLFS 317
>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1347
Score = 25.4 bits (53), Expect = 6.3
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +3
Query: 3 TRWRRSSTRALRERVGSPPNSREATQYIENLLTFITYIVAMRAS 134
T W+R RE+ S P SR +Y N + + +V +RAS
Sbjct: 488 TCWKRELRSKKREKSSSSPYSRGPYKY--NRIENLQMVVGVRAS 529
>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1337
Score = 25.0 bits (52), Expect = 8.3
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = -3
Query: 401 NTLQYADDLLLYVSGDSIDNMSDTVTYSLKLLKVWL 294
N Q+ D LL + S D + D YSL L WL
Sbjct: 702 NKPQFLDSLLSILKNSSGD-LFDQAIYSLDALNAWL 736
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,373,298
Number of Sequences: 5004
Number of extensions: 46773
Number of successful extensions: 128
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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