Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0262
(595 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF480924-3|AAM81188.1| 863|Homo sapiens pol protein protein. 36 0.11
U87595-1|AAB63117.1| 197|Homo sapiens polymerase protein. 31 3.1
U87589-1|AAB63112.1| 197|Homo sapiens polymerase protein. 31 3.1
DQ264729-1|ABB72674.1| 1132|Homo sapiens telomerase reverse tran... 31 3.1
AY007685-1|AAG23289.1| 1132|Homo sapiens telomerase catalytic su... 31 3.1
AK130656-1|BAC85402.1| 181|Homo sapiens protein ( Homo sapiens ... 31 3.1
AF128894-1|AAD30037.1| 1132|Homo sapiens telomerase reverse tran... 31 3.1
AF018167-1|AAC51724.1| 1132|Homo sapiens telomerase catalytic su... 31 3.1
AF015950-1|AAC51672.1| 1132|Homo sapiens telomerase reverse tran... 31 3.1
AB085628-1|BAC11010.1| 1069|Homo sapiens telomerase reverse tran... 31 3.1
>AF480924-3|AAM81188.1| 863|Homo sapiens pol protein protein.
Length = 863
Score = 35.9 bits (79), Expect = 0.11
Identities = 21/61 (34%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Frame = -3
Query: 524 ISEDSYQSRIVWKGLPQGSVLSPLLYNIYSHDLEASLR---GKVNTLQYADDLLLYVSGD 354
I+ R WK LPQG SP + +Y +R KV L Y DDLL+ +
Sbjct: 139 INHQGPDKRYEWKVLPQGMTNSPAICQLYVDQAVEPVRQQCPKVQILHYMDDLLITAESE 198
Query: 353 S 351
S
Sbjct: 199 S 199
>U87595-1|AAB63117.1| 197|Homo sapiens polymerase protein.
Length = 197
Score = 31.1 bits (67), Expect = 3.1
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Frame = -3
Query: 533 LKVISEDSYQSRIVWKGLPQGSVLSPLLYNIYSHDLEASLRGKVN---TLQYADDLLLYV 363
+ I+ +R WK LPQG + SP + + + +R K + + Y DD+L
Sbjct: 70 IPAINNKEPATRFQWKVLPQGMLNSPTICQTFVAQVLQPVRDKFSDCYIIHYVDDIL--C 127
Query: 362 SGDSIDNMSDTVTY 321
+ ++ D + D T+
Sbjct: 128 AAETRDKLIDCYTF 141
>U87589-1|AAB63112.1| 197|Homo sapiens polymerase protein.
Length = 197
Score = 31.1 bits (67), Expect = 3.1
Identities = 19/74 (25%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Frame = -3
Query: 533 LKVISEDSYQSRIVWKGLPQGSVLSPLLYNIYSHDLEASLRGKVN---TLQYADDLLLYV 363
+ I+ +R WK LPQG + SP + + + +R K + + Y DD+L
Sbjct: 70 IPAINNKEPATRFQWKVLPQGMLNSPTICQTFVAQVLQPVRDKFSDCYIIHYVDDIL--C 127
Query: 362 SGDSIDNMSDTVTY 321
+ ++ D + D T+
Sbjct: 128 AAETRDKLIDCYTF 141
>DQ264729-1|ABB72674.1| 1132|Homo sapiens telomerase reverse
transcriptase protein.
Length = 1132
Score = 31.1 bits (67), Expect = 3.1
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Frame = -3
Query: 506 QSRIVWKGLPQGSVLSPLLYNIYSHDLE----ASLRGKVNTLQYADDLLL 369
+S + +G+PQGS+LS LL ++ D+E A +R L+ DD LL
Sbjct: 823 KSYVQCQGIPQGSILSTLLCSLCYGDMENKLFAGIRRDGLLLRLVDDFLL 872
>AY007685-1|AAG23289.1| 1132|Homo sapiens telomerase catalytic
subunit protein.
Length = 1132
Score = 31.1 bits (67), Expect = 3.1
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Frame = -3
Query: 506 QSRIVWKGLPQGSVLSPLLYNIYSHDLE----ASLRGKVNTLQYADDLLL 369
+S + +G+PQGS+LS LL ++ D+E A +R L+ DD LL
Sbjct: 823 KSYVQCQGIPQGSILSTLLCSLCYGDMENKLFAGIRRDGLLLRLVDDFLL 872
>AK130656-1|BAC85402.1| 181|Homo sapiens protein ( Homo sapiens
cDNA FLJ27146 fis, clone SPL09537. ).
Length = 181
Score = 31.1 bits (67), Expect = 3.1
Identities = 31/128 (24%), Positives = 60/128 (46%), Gaps = 8/128 (6%)
Frame = -3
Query: 590 LNIPQIFISFIINLLSGRMLKVISEDSYQSRIVWK-GLPQGSVLSPLLYNIYSHDLEASL 414
L+I ++ I + +I ++ Q K G QG LSPLL+N DL ++
Sbjct: 8 LDIDGTYVKIIRAIYDKPTANIILDEQKQEAFPLKTGTRQGCPLSPLLFNTVLEDLARAI 67
Query: 413 R--GKVNTLQYADDL--LLYVSGDSIDNMSDTVTYSLKLLKVWLDNNSLS---LSVPKSI 255
R ++ +Q ++ L ++GD I + + + + K +K+ + + +S ++V KS
Sbjct: 68 RQEKEIKRIQIEREIVKLSLLAGDMILYLENHIILAQKPVKLISNFSKVSGYKINVQKSQ 127
Query: 254 IVLFSRMR 231
L+ R
Sbjct: 128 AFLYINNR 135
>AF128894-1|AAD30037.1| 1132|Homo sapiens telomerase reverse
transcriptase protein.
Length = 1132
Score = 31.1 bits (67), Expect = 3.1
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Frame = -3
Query: 506 QSRIVWKGLPQGSVLSPLLYNIYSHDLE----ASLRGKVNTLQYADDLLL 369
+S + +G+PQGS+LS LL ++ D+E A +R L+ DD LL
Sbjct: 823 KSYVQCQGIPQGSILSTLLCSLCYGDMENKLFAGIRRDGLLLRLVDDFLL 872
>AF018167-1|AAC51724.1| 1132|Homo sapiens telomerase catalytic
subunit protein.
Length = 1132
Score = 31.1 bits (67), Expect = 3.1
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Frame = -3
Query: 506 QSRIVWKGLPQGSVLSPLLYNIYSHDLE----ASLRGKVNTLQYADDLLL 369
+S + +G+PQGS+LS LL ++ D+E A +R L+ DD LL
Sbjct: 823 KSYVQCQGIPQGSILSTLLCSLCYGDMENKLFAGIRRDGLLLRLVDDFLL 872
>AF015950-1|AAC51672.1| 1132|Homo sapiens telomerase reverse
transcriptase protein.
Length = 1132
Score = 31.1 bits (67), Expect = 3.1
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Frame = -3
Query: 506 QSRIVWKGLPQGSVLSPLLYNIYSHDLE----ASLRGKVNTLQYADDLLL 369
+S + +G+PQGS+LS LL ++ D+E A +R L+ DD LL
Sbjct: 823 KSYVQCQGIPQGSILSTLLCSLCYGDMENKLFAGIRRDGLLLRLVDDFLL 872
>AB085628-1|BAC11010.1| 1069|Homo sapiens telomerase reverse
transcriptase protein.
Length = 1069
Score = 31.1 bits (67), Expect = 3.1
Identities = 19/50 (38%), Positives = 29/50 (58%), Gaps = 4/50 (8%)
Frame = -3
Query: 506 QSRIVWKGLPQGSVLSPLLYNIYSHDLE----ASLRGKVNTLQYADDLLL 369
+S + +G+PQGS+LS LL ++ D+E A +R L+ DD LL
Sbjct: 823 KSYVQCQGIPQGSILSTLLCSLCYGDMENKLFAGIRRDGLLLRLVDDFLL 872
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,796,813
Number of Sequences: 237096
Number of extensions: 1601993
Number of successful extensions: 2997
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2957
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2996
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 6268037466
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -