Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0261
         (506 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch...    25   4.9  
SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomy...    25   4.9  
SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit Alp4|...    25   4.9  
SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    25   6.5  
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    25   6.5  

>SPBC4F6.09 |str1||siderophore-iron transporter Str1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 612

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 304 TDHVFLIIIIINGFCLFAHIKINI 375
           +D  F+++III G CL A +   I
Sbjct: 327 SDAKFIVMIIIGGLCLIAFVLYEI 350


>SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = +1

Query: 331 IINGFCLFAHIKINI*INLLMTCLIN*YKIRVEPLFLTN 447
           ++ G  L A + + + + +LM CL++  + R  P+F+ N
Sbjct: 46  LLTGMTLSAQLALGV-LTILMVCLLSSSEKRKHPVFVFN 83


>SPBC365.15 |alp4||gamma tubulin complex Spc97/GCP2 subunit
           Alp4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 784

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -1

Query: 119 IIALIQLTHNLYIHMF*LKHSVF 51
           ++ L+Q + +LY H++ LKH  F
Sbjct: 413 LLQLLQSSQSLYAHLYSLKHYFF 435


>SPCC320.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 289

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 10/18 (55%), Positives = 12/18 (66%), Gaps = 3/18 (16%)
 Frame = -3

Query: 159 NHHS---KQIRHLVNCYN 115
           NHH    K+IRH + CYN
Sbjct: 143 NHHKSIVKRIRHEIKCYN 160


>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 25.0 bits (52), Expect = 6.5
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -1

Query: 500 HNVHAILSHRTILCDQFLFVKNNGSTLI 417
           H+ H  L  R IL D +  VKNN +TLI
Sbjct: 383 HSEHKFL--REILYDYYEHVKNNPNTLI 408


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,996,427
Number of Sequences: 5004
Number of extensions: 36883
Number of successful extensions: 52
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 202220600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)