Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0261
         (506 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0147 - 8895516-8895623,8895751-8895756,8895987-8896118,889...    29   2.8  
07_03_1461 - 26700613-26700621,26700784-26700851,26701778-267019...    28   3.7  

>05_03_0147 -
           8895516-8895623,8895751-8895756,8895987-8896118,
           8896499-8896600,8896822-8896858,8896950-8897242,
           8898293-8898418,8898590-8898726,8898818-8898889,
           8898972-8899020,8899242-8899312,8899395-8899505,
           8899602-8899929,8899999-8900172,8900519-8900578,
           8900622-8900861,8900986-8901048,8901123-8901125
          Length = 703

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = +3

Query: 297 VCNRSCFPNNHNH*WFLFV 353
           +C+   FP N NH WFLFV
Sbjct: 619 LCDMLHFPVNFNHHWFLFV 637


>07_03_1461 -
           26700613-26700621,26700784-26700851,26701778-26701919,
           26702011-26702318,26702415-26702481,26702543-26702664,
           26702763-26702815,26702924-26703006,26703092-26703160,
           26703235-26703633
          Length = 439

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 10/16 (62%), Positives = 15/16 (93%)
 Frame = -3

Query: 174 LTTYKNHHSKQIRHLV 127
           +++Y+ H+SKQIRHLV
Sbjct: 164 VSSYRKHNSKQIRHLV 179


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,237,683
Number of Sequences: 37544
Number of extensions: 184456
Number of successful extensions: 231
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 231
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)