Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0260
         (529 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    28   0.99 
SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase |Schizosaccharo...    25   5.3  
SPCC663.12 |cid12||poly|Schizosaccharomyces pombe|chr 3|||Manual       25   7.0  
SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase |Schiz...    25   9.2  

>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 27.9 bits (59), Expect = 0.99
 Identities = 15/40 (37%), Positives = 20/40 (50%)
 Frame = -3

Query: 332 TLPHPSNRNALLLHGKL*CMSHPGYNSSTRYKNCKTKITS 213
           T PHPSN+ A+L         H  ++SS+ Y    T  TS
Sbjct: 100 TSPHPSNQPAMLSPSTAASQHHHHHSSSSSYAVSPTSPTS 139


>SPAC3G9.07c |hos2|hda1, phd1|histone deacetylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 25.4 bits (53), Expect = 5.3
 Identities = 16/40 (40%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -2

Query: 393 PQCKCAT-HLEI*VLRSQYSYNAAPPFKPKRITASRQIIM 277
           PQ K  T HL+  V    Y Y    P KP RIT +  ++M
Sbjct: 23  PQKKRVTYHLDEQV--GNYHYGDKHPMKPHRITITNHLVM 60


>SPCC663.12 |cid12||poly|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 336

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 475 YFYFLLLSWVYEFIAHRVLSGYWSP 401
           +FYF  + W YE    R L+G   P
Sbjct: 214 FFYFWGVEWTYELFVLRPLTGQIVP 238


>SPAC21E11.08 |lcb2|SPAC2C4.02|serine palmitoyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 24.6 bits (51), Expect = 9.2
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -1

Query: 328 CPTLQTETHYCFTANYN 278
           CP L +   +CF+A++N
Sbjct: 520 CPLLTSRVRFCFSASHN 536


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,090,349
Number of Sequences: 5004
Number of extensions: 39617
Number of successful extensions: 77
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 76
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 216376042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)