Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0260
         (529 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69717-3|CAA93534.1|  617|Caenorhabditis elegans Hypothetical pr...    30   1.2  
AL009170-1|CAA15637.1|  617|Caenorhabditis elegans Hypothetical ...    30   1.2  

>Z69717-3|CAA93534.1|  617|Caenorhabditis elegans Hypothetical
           protein H19J13.1 protein.
          Length = 617

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +1

Query: 289 P*SSNAFRFEGWGSVVTILRP*NL-YLKVGGA--FTLWMSMGSSNH 417
           P +S  F  E +G V T L    + Y  +G A  F LW S+G +NH
Sbjct: 299 PVASRLFALEHFGDVATFLTTCIVEYSLIGAAIMFILWKSIGQNNH 344


>AL009170-1|CAA15637.1|  617|Caenorhabditis elegans Hypothetical
           protein H19J13.1 protein.
          Length = 617

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +1

Query: 289 P*SSNAFRFEGWGSVVTILRP*NL-YLKVGGA--FTLWMSMGSSNH 417
           P +S  F  E +G V T L    + Y  +G A  F LW S+G +NH
Sbjct: 299 PVASRLFALEHFGDVATFLTTCIVEYSLIGAAIMFILWKSIGQNNH 344


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,518,893
Number of Sequences: 27780
Number of extensions: 223520
Number of successful extensions: 400
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 400
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1038911524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)