Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0260
         (529 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    24   1.1  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   4.5  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   7.8  
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...    21   7.8  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.8 bits (49), Expect = 1.1
 Identities = 13/38 (34%), Positives = 15/38 (39%)
 Frame = +3

Query: 264 RMRHTL*FAVKQ*CVSV*RVGQRCNYTETLELISQGGW 377
           R R  + F   Q    V R  +RCN T     I   GW
Sbjct: 341 RARGCIIFGSDQEVAGVMRAVKRCNATGAFSWIGSDGW 378


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 4.5
 Identities = 10/15 (66%), Positives = 11/15 (73%)
 Frame = +1

Query: 274 IHYNLP*SSNAFRFE 318
           IHYNLP SS   RF+
Sbjct: 596 IHYNLPYSSLYGRFK 610


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +3

Query: 12  LLMLKVCGQIENRLDNIVGFNVIYL*CSFGEI 107
           +++L   GQI N    ++  +  ++ C F EI
Sbjct: 344 VIVLNHPGQISNGYTPVLDCHTAHIACKFAEI 375


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score = 21.0 bits (42), Expect = 7.8
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +3

Query: 12  LLMLKVCGQIENRLDNIVGFNVIYL*CSFGEI 107
           +++L   GQI N    ++  +  ++ C F EI
Sbjct: 55  VIVLNHPGQISNGYTPVLDCHTAHIACKFAEI 86


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,626
Number of Sequences: 438
Number of extensions: 3235
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14845611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)