Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0260
         (529 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g12520.1 68416.m01558 sulfate transporter family protein simi...    28   3.4  
At4g28650.1 68417.m04095 leucine-rich repeat transmembrane prote...    27   7.8  
At4g01925.1 68417.m00256 DC1 domain-containing protein low simil...    27   7.8  

>At3g12520.1 68416.m01558 sulfate transporter family protein similar
           to sulfate transporter [Arabidopsis thaliana]
           GI:3777483; contains Pfam profiles PF00916: Sulfate
           transporter family, PF01740: STAS domain
          Length = 677

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -1

Query: 466 FLLLSWVYEFIAHRVLSGY 410
           FL L W+  FI+H V+SG+
Sbjct: 181 FLRLGWLIRFISHSVISGF 199


>At4g28650.1 68417.m04095 leucine-rich repeat transmembrane protein
           kinase, putative receptor-like protein kinase 5,
           Arabidopsis thaliana, PIR1:S27756
          Length = 1013

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -2

Query: 495 IEMHTIFIFIFYCLVGCTSS 436
           ++M  I +F++YC +G TSS
Sbjct: 1   MKMKIIVLFLYYCYIGSTSS 20


>At4g01925.1 68417.m00256 DC1 domain-containing protein low
           similarity to UV-B light insensitive ULI3 [Arabidopsis
           thaliana] GI:17225050; contains Pfam profile PF03107:
           DC1 domain
          Length = 399

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
 Frame = +2

Query: 380 HLHCGCLWAPVTT*HPV----GYELVHPTK 457
           H H  C+W P    HP+     Y  +HP K
Sbjct: 90  HFHVDCVWHPTELKHPLEVNHPYHALHPLK 119


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,520,211
Number of Sequences: 28952
Number of extensions: 198238
Number of successful extensions: 315
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 311
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 315
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 977150592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)