Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0257
         (638 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21683| Best HMM Match : Fe_dep_repress (HMM E-Value=4)              29   3.2  
SB_41787| Best HMM Match : Frizzled (HMM E-Value=0)                    29   4.2  
SB_39493| Best HMM Match : zf-TRAF (HMM E-Value=1.5e-09)               28   5.6  
SB_45045| Best HMM Match : Kinesin (HMM E-Value=0)                     27   9.7  

>SB_21683| Best HMM Match : Fe_dep_repress (HMM E-Value=4)
          Length = 268

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 20/81 (24%), Positives = 39/81 (48%)
 Frame = +3

Query: 261 SNLINLEVIIDIEHELRKESGDLISLMFLLYDDPDIALVKLTAYQQSSNAYHEHSLLQDW 440
           + +I   V  D EH+L KE  + +  +F + D+ +   VKL   Q   +       L   
Sbjct: 60  TTIIASPVPADKEHDLPKEFTNYMRALFGILDEHNTGYVKLADIQSYLDVKEGQGGLPAG 119

Query: 441 LLKAKCKLTWKHELVEGLLIC 503
           +L++  K+T ++ L++   +C
Sbjct: 120 ILESLYKVTPRNGLLDFESLC 140


>SB_41787| Best HMM Match : Frizzled (HMM E-Value=0)
          Length = 542

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = +3

Query: 330 ISLMFLLYDDPDIALVKLTAYQQSSNAYHEHSLLQDWLLKAKC 458
           I +  +LY  P + ++    Y+QS+    ++S ++ W  + KC
Sbjct: 426 IGVFSILYTVPALVVIGCLYYEQSNRELWDNSWIEGWKRQKKC 468


>SB_39493| Best HMM Match : zf-TRAF (HMM E-Value=1.5e-09)
          Length = 310

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 539 FKQLKNILPNRQLHNEHTYKSCKKVI 616
           F+ +KN L + ++H +H  K CK V+
Sbjct: 68  FRYMKNDLDSLKIHCDHQSKGCKSVV 93


>SB_45045| Best HMM Match : Kinesin (HMM E-Value=0)
          Length = 1260

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = -1

Query: 470  PGQLTFCL*KPILKQGMLMICITRLLISC 384
            PG    CL  P+L+Q + ++ + + L+SC
Sbjct: 1048 PGPDKLCLSLPVLEQALNLLLVNKTLMSC 1076


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,270,178
Number of Sequences: 59808
Number of extensions: 378661
Number of successful extensions: 855
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)