Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0257
         (638 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g26020.1 68417.m03747 expressed protein weak similarity to ca...    29   3.4  
At3g19820.2 68416.m02511 cell elongation protein / DWARF1 / DIMI...    29   3.4  
At3g19820.1 68416.m02510 cell elongation protein / DWARF1 / DIMI...    29   3.4  
At1g19270.1 68414.m02397 ubiquitin interaction motif-containing ...    29   3.4  
At3g44280.1 68416.m04755 expressed protein                             28   4.5  

>At4g26020.1 68417.m03747 expressed protein weak similarity to
           cardiac muscle factor 1 [Gallus gallus] GI:14422164
          Length = 247

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 19/69 (27%), Positives = 33/69 (47%)
 Frame = -1

Query: 290 DNHFQVYKVAVQHKAVNISTKINNRSRTRRLHLFIQHKNIKFERNCLKIGIL*SQNQYTT 111
           D  ++ +K+ +    +N+    +N   +RR  L I +KN+K E   LK     S N +  
Sbjct: 17  DQIYEDFKIGLNE--INVYRSKSNVESSRREVLEISNKNLKEENERLKKLYTESLNNFAD 74

Query: 110 HLKSATQPH 84
            L+  T+ H
Sbjct: 75  QLEHRTKCH 83


>At3g19820.2 68416.m02511 cell elongation protein / DWARF1 /
           DIMINUTO (DIM) identical to GB:S71189 [SP|Q39085] from
           [Arabidopsis thaliana]; contains Pfam FAD binding domain
           PF01565
          Length = 561

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +3

Query: 360 PDIALVKLTAYQQSSNAYHEHSLLQDWLL---KAKCKLTWKHELVE 488
           P ++L+K T  +   N YH+  ++QD L+   K    L W H  +E
Sbjct: 369 PKVSLLKATQGEAIRNYYHDMHVIQDMLVPLYKVGDALEWVHREME 414


>At3g19820.1 68416.m02510 cell elongation protein / DWARF1 /
           DIMINUTO (DIM) identical to GB:S71189 [SP|Q39085] from
           [Arabidopsis thaliana]; contains Pfam FAD binding domain
           PF01565
          Length = 561

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 3/46 (6%)
 Frame = +3

Query: 360 PDIALVKLTAYQQSSNAYHEHSLLQDWLL---KAKCKLTWKHELVE 488
           P ++L+K T  +   N YH+  ++QD L+   K    L W H  +E
Sbjct: 369 PKVSLLKATQGEAIRNYYHDMHVIQDMLVPLYKVGDALEWVHREME 414


>At1g19270.1 68414.m02397 ubiquitin interaction motif-containing
           protein / LIM domain-containing protein weak similarity
           to LIM-homeobox protein [Mus musculus] GI:2149584, Hic-5
           [Mus musculus] GI:664955; contains Pfam profiles
           PF02809: Ubiquitin interaction motif, PF00412: LIM
           domain
          Length = 532

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 13/27 (48%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = -3

Query: 615 ITFLQDLYVCSLCNCLFG-SMFLSCLN 538
           ITF  D  +C+ CN   G   FL+CLN
Sbjct: 163 ITFQMDFRICAGCNMEIGHGRFLNCLN 189


>At3g44280.1 68416.m04755 expressed protein 
          Length = 108

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = +3

Query: 498 ICKMNNLIRKMGFDLNSLKTYYQTDNCIMSIHINPVKKLFTEYARK 635
           I ++N L+R +   L   K   +T N   S HIN   K F E  RK
Sbjct: 61  IQRLNELVRSLQLQLLQCKGENETQNATKSYHIN---KQFIEVERK 103


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,518,542
Number of Sequences: 28952
Number of extensions: 269867
Number of successful extensions: 681
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 672
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)