Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= P5PG0256
         (582 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.37 
SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase |Schi...    29   0.50 
SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces...    26   3.5  
SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein glycotr...    26   4.6  
SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|ch...    25   6.1  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    25   6.1  

>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 29.5 bits (63), Expect = 0.37
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 266 IRDKKGSNTEERMRKYLDQPIFSRIKYEHPEYFKKII 376
           +  K  SN E+R+ KY+      R   +HP++  K++
Sbjct: 393 VHQKLNSNLEKRVEKYIKHSCSQRNVADHPDFALKVV 429


>SPAP7G5.04c |lys1||aminoadipate-semialdehyde dehydrogenase
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1419

 Score = 29.1 bits (62), Expect = 0.50
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = +2

Query: 365  KKIIPISGDITAPKLGLCDEERNILINEVSIVIHSAASVKLNDHLKFTLNTNVGGTMKVL 544
            +KI  ++GD+     G+ + + N L   V  VIH+ A V            NV GT+  L
Sbjct: 1065 QKISVVNGDLALENWGIEERKWNKLTEVVDYVIHNGALVHWVYPYSKLRGPNVMGTITAL 1124

Query: 545  EL 550
            +L
Sbjct: 1125 KL 1126


>SPBC15D4.15 |pho2||4-nitrophenylphosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 298

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +2

Query: 419 DEERNILINEVSIVIHSAASV--KLNDHLKFTLNTNVGGTMKVLELVKEMKNL 571
           DE    +I  V+     A  V  +LN  ++F  N+N+GG++ VL  V + + +
Sbjct: 223 DEMMEAIIANVNFDRKKACFVGDRLNTDIQFAKNSNLGGSLLVLTGVSKEEEI 275


>SPCC338.15 |||dolichyl-di-phosphooligosaccharide-protein
           glycotransferase subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 437

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = -1

Query: 438 NIFLSSSHNPSLGAVISPEMGMIFLKYSGCSYFI 337
           N+ L SS + SLG V SP+  + F++ SG + F+
Sbjct: 71  NLILLSSQSKSLGPVFSPKSLLEFVQ-SGGNLFV 103


>SPBC4F6.11c |||asparagine synthase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 548

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 488 NDHLKFTLNTNVGGTMKVLELV 553
           +DH KFTLN N     K+ EL+
Sbjct: 89  SDHHKFTLNRNENDGAKLFELL 110


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting protein
            3 homolog Bud6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1385

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 13/41 (31%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +2

Query: 446  EVSIVIHSAASVKLNDHLKFTLNTNVGGTM-KVLELVKEMK 565
            EVS + HS+A   L+DH+  T + +      ++LE +K ++
Sbjct: 879  EVSAIQHSSAQNTLDDHVNTTTHESPSSAFTEILERLKAIE 919


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,450,257
Number of Sequences: 5004
Number of extensions: 52557
Number of successful extensions: 143
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)