Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= P5PG0256
(582 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0423 + 18035688-18036572,18036659-18036978,18052618-180527... 69 3e-12
09_06_0327 + 22359524-22359602,22359732-22359835,22362073-223622... 67 8e-12
08_02_0085 + 12108474-12108552,12108656-12108759,12109726-121099... 64 6e-11
08_02_1566 + 27909297-27909390,27909542-27909645,27912899-279130... 63 2e-10
04_03_0543 + 16955440-16955518,16956623-16956726,16957456-169576... 59 2e-09
04_03_0539 + 16892822-16892900,16894004-16894107,16894718-168949... 58 7e-09
04_03_0545 + 16996340-16996418,16998039-16998142,16999796-169999... 52 4e-07
11_01_0145 + 1204021-1204296,1204430-1204492,1204667-1204795,120... 29 3.6
07_03_0076 - 13123676-13123720,13124611-13124714,13124813-13124891 29 3.6
12_02_0973 + 24959440-24959451,24959962-24962195,24962539-249626... 27 8.2
>07_03_0423 +
18035688-18036572,18036659-18036978,18052618-18052724,
18053001-18053104,18054129-18054328,18054422-18054522,
18054695-18054841,18055007-18055166,18055287-18055368,
18056070-18056336,18056846-18056973,18057513-18057672
Length = 886
Score = 68.9 bits (161), Expect = 3e-12
Identities = 42/135 (31%), Positives = 70/135 (51%), Gaps = 6/135 (4%)
Frame = +2
Query: 194 GFLGKAYVEKLAYSCPGIVSIYILIRDKKGSNTEER-MRKYLDQPIFSRIKYEHPEYF-- 364
GFLGK +VEK+ P + I++L+R S+ E+R + + + +F ++ + F
Sbjct: 433 GFLGKIFVEKILRIQPDVKKIFLLVRAADTSSAEQRVLNEVIGNELFGPLRENYGSNFYS 492
Query: 365 ---KKIIPISGDITAPKLGLCDEERNILINEVSIVIHSAASVKLNDHLKFTLNTNVGGTM 535
+KI P++GDI LGL E L E+ I+++ AA+ + +L +NV G
Sbjct: 493 FMKEKISPLAGDIINENLGLESLEILKLSKEIDIIVNGAATTNFYERYDVSLASNVLGAK 552
Query: 536 KVLELVKEMKNLAMF 580
V + K+ NL MF
Sbjct: 553 YVCKFAKKCANLKMF 567
>09_06_0327 +
22359524-22359602,22359732-22359835,22362073-22362272,
22362359-22362459,22362551-22363005,22363079-22363645
Length = 501
Score = 67.3 bits (157), Expect = 8e-12
Identities = 37/135 (27%), Positives = 72/135 (53%), Gaps = 6/135 (4%)
Frame = +2
Query: 194 GFLGKAYVEKLAYSCPGIVSIYILIRDKKGSNTEERMR-KYLDQPIFSRIKYEHPEYFK- 367
GFLGK VEK+ P + IY+ +R + ++RM+ + + + +F +K +H + F+
Sbjct: 22 GFLGKILVEKILRVQPDVRKIYLPVRAVDAATAKQRMQTEVIGKELFGLLKEQHGKGFQS 81
Query: 368 ----KIIPISGDITAPKLGLCDEERNILINEVSIVIHSAASVKLNDHLKFTLNTNVGGTM 535
K++P++ D+ LGL + L +++I+++ AA+ + L+ NV G
Sbjct: 82 FIDEKVVPLAADMMHQNLGLEESTLQELAKDLNIIVNGAATTNFYERYDVALDVNVMGVK 141
Query: 536 KVLELVKEMKNLAMF 580
+ +L K+ NL +F
Sbjct: 142 YLCQLAKKCANLEVF 156
>08_02_0085 +
12108474-12108552,12108656-12108759,12109726-12109925,
12110003-12110103,12110184-12110379,12110584-12110745,
12110856-12110937,12111741-12112004,12113047-12113174,
12113795-12113957
Length = 492
Score = 64.5 bits (150), Expect = 6e-11
Identities = 38/134 (28%), Positives = 66/134 (49%), Gaps = 6/134 (4%)
Frame = +2
Query: 194 GFLGKAYVEKLAYSCPGIVSIYILIRDKKGSNTEERMR-KYLDQPIFSRIKYEHPEYFK- 367
GFLGK VEK+ P + +Y+L+R + R++ + + IF +K +H + F+
Sbjct: 22 GFLGKVLVEKILRVQPDVKKLYLLVRANDVESATRRVQDEVTGKEIFQVLKEKHGDGFES 81
Query: 368 ----KIIPISGDITAPKLGLCDEERNILINEVSIVIHSAASVKLNDHLKFTLNTNVGGTM 535
K+ ++GDI LGL + L NE+ I+++ AA+ + ++NV G
Sbjct: 82 FVEEKVCTLAGDIIYENLGLDSAKLTELSNEIDIIVNGAATTNFYERYDVAFDSNVLGAK 141
Query: 536 KVLELVKEMKNLAM 577
+ E K+ L M
Sbjct: 142 NICEFAKKCTKLKM 155
>08_02_1566 +
27909297-27909390,27909542-27909645,27912899-27913098,
27913214-27913314,27913427-27914130,27914671-27914834,
27914941-27915100
Length = 508
Score = 62.9 bits (146), Expect = 2e-10
Identities = 37/135 (27%), Positives = 71/135 (52%), Gaps = 6/135 (4%)
Frame = +2
Query: 194 GFLGKAYVEKLAYSCPGIVSIYILIRDKKGSNTEERMRKYLDQP-IFSRIKYEHPEYF-- 364
GFLGK VEK+ P + IY+L+R ++ +R++ + + +FS +K +H + F
Sbjct: 27 GFLGKILVEKILRVQPDVKKIYLLVRAIDQASANQRVQSEVTETELFSVVKEKHGKGFSR 86
Query: 365 ---KKIIPISGDITAPKLGLCDEERNILINEVSIVIHSAASVKLNDHLKFTLNTNVGGTM 535
+K++ ++GDI LGL L + + ++++ AA+ +L+ NV G
Sbjct: 87 FIEEKVVALAGDIIYDDLGLDPPLLQHLADNLDVIVNGAATTNFYGRYDVSLDVNVLGVK 146
Query: 536 KVLELVKEMKNLAMF 580
+ +L K+ + L +F
Sbjct: 147 HLCQLAKKCRGLKVF 161
>04_03_0543 +
16955440-16955518,16956623-16956726,16957456-16957655,
16958554-16958654,16959408-16959603,16960243-16960324,
16960402-16960668,16960790-16960917,16961285-16961465
Length = 445
Score = 59.3 bits (137), Expect = 2e-09
Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 6/134 (4%)
Frame = +2
Query: 194 GFLGKAYVEKLAYSCPGIVSIYILIRDKKGSNTEER-MRKYLDQPIFSRIKYEHPEYF-- 364
GFLGK VEK+ P + +Y+L+R EER + + + + +F ++ ++ F
Sbjct: 22 GFLGKLLVEKILRVQPEVRKLYLLVRAPDAIAAEERVLTEVVGKGLFDVLREQYGAGFNS 81
Query: 365 ---KKIIPISGDITAPKLGLCDEERNILINEVSIVIHSAASVKLNDHLKFTLNTNVGGTM 535
+KI + GD+ GL E L +V I+++ AA+ + L TN G M
Sbjct: 82 FIKEKIYALPGDVMHENFGLESYEVLQLSQKVDIIVNGAATTNFMERYDVALATNAAGVM 141
Query: 536 KVLELVKEMKNLAM 577
+ + K+ NL M
Sbjct: 142 HLCQFAKQCDNLKM 155
>04_03_0539 +
16892822-16892900,16894004-16894107,16894718-16894917,
16896078-16896178,16897546-16897735,16898377-16898458,
16899374-16899501,16899846-16900026
Length = 354
Score = 57.6 bits (133), Expect = 7e-09
Identities = 37/134 (27%), Positives = 64/134 (47%), Gaps = 6/134 (4%)
Frame = +2
Query: 194 GFLGKAYVEKLAYSCPGIVSIYILIRDKKGSNTEER-MRKYLDQPIFSRIKYEHPEYF-- 364
GFLGK VEK+ P + +Y+L+R EER + + + +F ++ ++ F
Sbjct: 22 GFLGKLLVEKILRVQPEVRKLYLLVRAPDAIAAEERVLTEVVGNGLFDVLREQYGAGFHS 81
Query: 365 ---KKIIPISGDITAPKLGLCDEERNILINEVSIVIHSAASVKLNDHLKFTLNTNVGGTM 535
+KI + GD+T GL + L +V I+++ AA+ + L TN G +
Sbjct: 82 FIKEKIYALPGDVTHENFGLESYDILQLSQKVDIIVNGAATTNFMERYDVALATNTTGVV 141
Query: 536 KVLELVKEMKNLAM 577
+ + K+ NL M
Sbjct: 142 HLCQFAKQCDNLKM 155
>04_03_0545 +
16996340-16996418,16998039-16998142,16999796-16999995,
17000186-17000228
Length = 141
Score = 51.6 bits (118), Expect = 4e-07
Identities = 33/114 (28%), Positives = 59/114 (51%), Gaps = 7/114 (6%)
Frame = +2
Query: 194 GFLGKAYVEKLAYSCPGIVSIYILIRDKKGSNTEER-MRKYLDQPIFSRIKYEHPEYF-- 364
GFL K VEK+ P + +Y+L+R + +ER + + + + +F ++ +H F
Sbjct: 22 GFLAKMLVEKILRIQPDVRKLYLLVRAPDAAAAKERLLTEVVGKGLFDVLREQHGASFHS 81
Query: 365 ---KKIIPISGDITAPKLGLCDEERNILINEVSIVIHSAASVKLNDH-LKFTLN 514
+K+ P+ GDIT GL + E L +V I+++ AA+ + + TLN
Sbjct: 82 FIKEKVCPLPGDITHQNFGLGNSEILRLSQDVDIIVNGAATTNFMERKVNETLN 135
>11_01_0145 +
1204021-1204296,1204430-1204492,1204667-1204795,
1205778-1205834,1205915-1206213,1206539-1206630,
1206747-1206961,1207142-1207325,1207447-1207541,
1208572-1208628,1209372-1209426,1209955-1210079
Length = 548
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/57 (24%), Positives = 28/57 (49%)
Frame = +2
Query: 320 QPIFSRIKYEHPEYFKKIIPISGDITAPKLGLCDEERNILINEVSIVIHSAASVKLN 490
QP+ + + P + K P+ TA + + DE+ N ++ V V+H+ + + N
Sbjct: 133 QPLLDKAIHVVPNWLMKKTPLKLGATAGLILIGDEKANQILEAVRDVVHTKSKFQYN 189
>07_03_0076 - 13123676-13123720,13124611-13124714,13124813-13124891
Length = 75
Score = 28.7 bits (61), Expect = 3.6
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +2
Query: 194 GFLGKAYVEKLAYSCPGIVSIYILIR 271
GF+ K VEK+ PG+ +Y+L+R
Sbjct: 22 GFIAKLLVEKILRLQPGVKRLYLLVR 47
>12_02_0973 + 24959440-24959451,24959962-24962195,24962539-24962653,
24963146-24963943,24964140-24964422,24964500-24964951,
24965744-24965870,24965950-24966074,24966188-24966858,
24966976-24967093,24967177-24967293,24967564-24967658,
24968152-24968303,24968858-24968913,24969001-24969218,
24969842-24970239,24970345-24970628,24970730-24970836,
24970882-24970968,24971729-24971990,24972228-24972503,
24973197-24973254,24973437-24973756,24973889-24973999,
24974183-24974350,24974494-24974622,24974731-24974820,
24974934-24975040,24975133-24975281,24975584-24975666,
24975749-24975844,24975957-24976079,24976180-24976263,
24976371-24976511,24976652-24976951,24977386-24977453,
24977540-24977642,24979363-24979524,24979613-24981230,
24981270-24981661,24981689-24981991,24982078-24982161,
24982296-24982448,24982678-24982841,24982915-24983062,
24983209-24983331,24983409-24983496,24983686-24983867
Length = 4177
Score = 27.5 bits (58), Expect = 8.2
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -3
Query: 319 IKIFSHSLFSVRPFLVSNQNVNAYYARTRI 230
I +F LFS P VS Q+ + +RTR+
Sbjct: 1733 ISLFKEGLFSTAPINVSLQDSGVFASRTRV 1762
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,377,376
Number of Sequences: 37544
Number of extensions: 285367
Number of successful extensions: 585
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 581
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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